PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462950678
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family bHLH
Protein Properties Length: 670aa    MW: 73717 Da    PI: 6.1035
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462950678genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH42.61.1e-13324369454
                HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
        HLH   4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                +h e+Er+RR+++N++f  Lr ++P+ +      K++Ka+iLe A+ +I +L
  462950678 324 SHVEAERQRREKLNKRFCALRAVVPNiS------KVDKASILEDAIAHIADL 369
                799***********************66......***************998 PP

2HLH42.61.1e-13554599454
                HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
        HLH   4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                +h e+Er+RR+++N++f  Lr ++P+ +      K++Ka+iLe A+ +I +L
  462950678 554 SHVEAERQRREKLNKRFCALRAVVPNiS------KVDKASILEDAIAHIADL 599
                799***********************66......***************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142151.5E-4854243IPR025610Transcription factor MYC/MYB N-terminal
CDDcd000834.47E-14318373No hitNo description
PROSITE profilePS5088816.666320369IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.1E-16323382IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.5E-16324383IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.2E-11324369IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.7E-14326375IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF142155.1E-16396473IPR025610Transcription factor MYC/MYB N-terminal
CDDcd000834.47E-14548603No hitNo description
PROSITE profilePS5088816.666550599IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474598.9E-17553614IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.8E-16554614IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.2E-11554599IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.7E-14556605IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 670 aa     Download sequence    Send to blast
MKTEIEEIAT GGSWTEEEKS LCSSVLGSDA FTYLSKGGHA ISEGLVTTST LVDLQNKLQN  60
LVEADSQSFR WNYAIFWQLS RTKFGDIVLG WGDGCCREPH DSEMGSAAPI IIDDVPPVTK  120
QRMRKRVLQR LHATFGGADE EDFAPGIDQV TDTEIFFLTS MYFTFPRQVG GPGKVYASGA  180
PLWVPNNDPK ISPANYCYRG FLANAAGFKT IVLLPFETGV LELGSMKKVP ESVEALETIR  240
SAFSGALSNR TAIIKHDENG SVQASQGLAK IFGNNLNFSQ PLASKGVAAP NVEGSSWDPQ  300
KSNNELHMES DSRAEFSSTE EPLSHVEAER QRREKLNKRF CALRAVVPNI SKVDKASILE  360
DAIAHIADLK KKLTELEAEK EKSEHPECRD QPGQVTYTRN YSSKVYASGA PLWVPNNDPK  420
ISPANYCYRG FLANAAGFKT IVLLPFETGV LELGSMKKVP ESVEALETIR SAFSGALSNR  480
TAIIKHDENG SVQASQGLAK IFGNNLNFSQ PLASKGVAAP NVEGSSWDPQ KSNNELHMES  540
DSRAEFSSTE EPLSHVEAER QRREKLNKRF CALRAVVPNI SKVDKASILE DAIAHIADLK  600
KKLTELEAEK EKSNYTLKCT KRSGPSNLDG HRTNQPELDG AAETEICCER ATGRLNPKRF  660
QSGILEVYFW
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rru_A1e-195423948227Transcription factor MYC3
4ywc_A1e-195423948227Transcription factor MYC3
4ywc_B1e-195423948227Transcription factor MYC3
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004960675.11e-150PREDICTED: transcription factor bHLH13-like
SwissprotQ9LNJ51e-69BH013_ARATH; Transcription factor bHLH13
TrEMBLA0A0A8Y7171e-154A0A0A8Y717_ARUDO; Uncharacterized protein
STRINGSi021549m1e-150(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP51743860
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01260.36e-71bHLH family protein