PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462949961
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family bHLH
Protein Properties Length: 265aa    MW: 28395.1 Da    PI: 5.5907
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462949961genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH43.26.9e-1467118155
                CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
        HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                +r++h ++Er+RR+++N+ ++ Lr+l+P+    + ++ + a+i+  A+e++k+L+
  462949961  67 QRMTHIAVERNRRRQMNEYLAMLRSLMPET---YVQRGDQASIVGGAIEFVKELE 118
                79***************************9...9******************995 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000838.53E-1565122No hitNo description
SuperFamilySSF474598.64E-1865134IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.23166117IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.4E-1567133IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.7E-1167118IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.0E-1172123IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 265 aa     Download sequence    Send to blast
MSALVDALCA APSSDAALIY DTFHAASAAS FLFDNAAAAA FCDAGIARSK RRRRTRSCKS  60
KEEAESQRMT HIAVERNRRR QMNEYLAMLR SLMPETYVQR GDQASIVGGA IEFVKELEQQ  120
LQSLEAQKRT LVHQDKARSD ATMPMHTSCA NAAAAATAPA CVDSATTTTT TSNCSSSVTE  180
DASDAPPFAG FFTYPQMVTG LQALRLTVLH LTVTTLDALA LYSLSVKVED ECGLTTVEDI  240
AAAVHHVLCI IDAEATAQQL LAVGQ
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16778RMTHIAVERNRR
Cis-element ? help Back to Top
SourceLink
PlantRegMap462949961
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0960445e-97FP096044.1 Phyllostachys edulis cDNA clone: bphylf042a03, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025800848.11e-102transcription factor bHLH94-like
SwissprotQ9C7T42e-51BH096_ARATH; Transcription factor bHLH96
TrEMBLA0A2T7FAP71e-101A0A2T7FAP7_9POAL; Uncharacterized protein
TrEMBLA0A3L6QDM11e-101A0A3L6QDM1_PANMI; Transcription factor bHLH94
STRINGPavir.Ab02502.1.p3e-99(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP37123678
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72210.19e-30bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]