PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462949010
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family SBP
Protein Properties Length: 273aa    MW: 29497.1 Da    PI: 9.7832
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462949010genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP46.97.1e-1516464878
               SEEETTT--SS--S-STTTT-------S--- CS
        SBP 48 rfhelsefDeekrsCrrrLakhnerrrkkqa 78
               rfh l efDe+krsCr+rL++hn+rrrk+q+
  462949010 16 RFHLLAEFDEAKRSCRKRLDGHNRRRRKPQP 46
               9***************************997 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5114112.862144IPR004333Transcription factor, SBP-box
Gene3DG3DSA:4.10.1100.106.9E-51531IPR004333Transcription factor, SBP-box
PfamPF031109.1E-81543IPR004333Transcription factor, SBP-box
SuperFamilySSF1036121.71E-121649IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 273 aa     Download sequence    Send to blast
MPKTQKVSAT RTVRKRFHLL AEFDEAKRSC RKRLDGHNRR RRKPQPDPMT SASFITSQQG  60
TRFSPFATPR PDANWPGIIK TEESPYYTHQ IPLSTSNMQH FVGSTSAYTK EGRRFPFLQE  120
GGINFATGVV LEAASVCQPL LKTVAAPLDS GGGSGSSKMF SEGLTRVLDS DCALSLLSAP  180
ANSSGIDVGR MVRPAEHVPM AQPLVSGLQF GSSSWFSRPQ AAVSAVTTAG LESEQMNTVM  240
GANDNDMNYN GMFHVGGEGS SNGTSSSLPF SWQ
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12643KRSCRKRLDGHNRRRRKP
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap462949010
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Negatively regulated by microRNAs miR156b and miR156h. {ECO:0000305|PubMed:16861571}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020194874.11e-131squamosa promoter-binding-like protein 16
SwissprotQ6YZE81e-113SPL16_ORYSJ; Squamosa promoter-binding-like protein 16
TrEMBLA0A0A9K1H01e-153A0A0A9K1H0_ARUDO; Uncharacterized protein
STRINGPavir.J28847.1.p1e-131(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP17553795
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50670.13e-16SBP family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Wang SS,Wang CS,Tseng TH,Hou YL,Chen KY
    High-resolution genetic mapping and candidate gene identification of the SLP1 locus that controls glume development in rice.
    Theor. Appl. Genet., 2011. 122(8): p. 1489-96
    [PMID:21327937]
  3. Wang S, et al.
    Control of grain size, shape and quality by OsSPL16 in rice.
    Nat. Genet., 2012. 44(8): p. 950-4
    [PMID:22729225]
  4. Wang S, et al.
    The OsSPL16-GW7 regulatory module determines grain shape and simultaneously improves rice yield and grain quality.
    Nat. Genet., 2015. 47(8): p. 949-54
    [PMID:26147620]
  5. Wang Y, et al.
    A comprehensive meta-analysis of plant morphology, yield, stay-green, and virus disease resistance QTL in maize (Zea mays L.).
    Planta, 2016. 243(2): p. 459-71
    [PMID:26474992]
  6. Lee CM, et al.
    Influence of Multi-Gene Allele Combinations on Grain Size of Rice and Development of a Regression Equation Model to Predict Grain Parameters.
    Rice (N Y), 2015. 8(1): p. 33
    [PMID:26519289]
  7. Bessho-Uehara K, et al.
    Loss of function at RAE2, a previously unidentified EPFL, is required for awnlessness in cultivated Asian rice.
    Proc. Natl. Acad. Sci. U.S.A., 2016. 113(32): p. 8969-74
    [PMID:27466405]