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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
Previous version:
v3.0
v4.0
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 462948995 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
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Family | bHLH | ||||||||
Protein Properties | Length: 302aa MW: 32564.9 Da PI: 6.3582 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 42.2 | 1.4e-13 | 161 | 205 | 6 | 55 |
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +Er RR+r+N+++ Lr+++P+ +K++Ka+iL+ A+ YI Lq 462948995 161 MVMERDRRRRLNEKLYALRSVVPNI-----TKMDKASILRDAIAYIERLQ 205 569*********************7.....7*****************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 2.22E-17 | 155 | 219 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 15.853 | 155 | 204 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.06E-15 | 158 | 209 | No hit | No description |
Pfam | PF00010 | 3.4E-11 | 161 | 205 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.2E-15 | 161 | 210 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.2E-17 | 161 | 221 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd04873 | 0.00133 | 233 | 292 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 302 aa Download sequence Send to blast |
MPVVPASGNH QCVLACSCSC SQYYGACAIE LPAAGVEKKT RKLFSLGVVA QPQQRKRARE 60 HSNLLDRSCR PMETDLLGVG FDFYWQPPPH LMLDAYDLAV DSMYNVPVTE AAGDSMSGLY 120 AYREDSNSPD GANSCSAAVP TASSSPPPPT HPGEGAATKN MVMERDRRRR LNEKLYALRS 180 VVPNITKMDK ASILRDAIAY IERLQDEERR MLAEVSALES SAGAVSEAGE KVSVVSVRCS 240 RGRDAVAKVC RALEQLRLRV VTATIAAVGD AVVHTMFVQS DGVSRGDVTW AADKDGAVAL 300 DD |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 462948995 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU961023 | 4e-39 | EU961023.1 Zea mays clone 230521 DNA binding like mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025823076.1 | 1e-82 | transcription factor bHLH35-like isoform X1 | ||||
Refseq | XP_025823077.1 | 8e-83 | transcription factor bHLH35-like isoform X2 | ||||
TrEMBL | A0A0A9IMR0 | 1e-97 | A0A0A9IMR0_ARUDO; Uncharacterized protein | ||||
STRING | Pavir.Gb02374.1.p | 3e-80 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1044 | 38 | 133 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G57150.1 | 4e-32 | bHLH family protein |