PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462948995
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family bHLH
Protein Properties Length: 302aa    MW: 32564.9 Da    PI: 6.3582
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462948995genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH42.21.4e-13161205655
                HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
        HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                  +Er RR+r+N+++  Lr+++P+      +K++Ka+iL+ A+ YI  Lq
  462948995 161 MVMERDRRRRLNEKLYALRSVVPNI-----TKMDKASILRDAIAYIERLQ 205
                569*********************7.....7*****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.22E-17155219IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.853155204IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.06E-15158209No hitNo description
PfamPF000103.4E-11161205IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.2E-15161210IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.2E-17161221IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd048730.00133233292No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 302 aa     Download sequence    Send to blast
MPVVPASGNH QCVLACSCSC SQYYGACAIE LPAAGVEKKT RKLFSLGVVA QPQQRKRARE  60
HSNLLDRSCR PMETDLLGVG FDFYWQPPPH LMLDAYDLAV DSMYNVPVTE AAGDSMSGLY  120
AYREDSNSPD GANSCSAAVP TASSSPPPPT HPGEGAATKN MVMERDRRRR LNEKLYALRS  180
VVPNITKMDK ASILRDAIAY IERLQDEERR MLAEVSALES SAGAVSEAGE KVSVVSVRCS  240
RGRDAVAKVC RALEQLRLRV VTATIAAVGD AVVHTMFVQS DGVSRGDVTW AADKDGAVAL  300
DD
Cis-element ? help Back to Top
SourceLink
PlantRegMap462948995
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9610234e-39EU961023.1 Zea mays clone 230521 DNA binding like mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025823076.11e-82transcription factor bHLH35-like isoform X1
RefseqXP_025823077.18e-83transcription factor bHLH35-like isoform X2
TrEMBLA0A0A9IMR01e-97A0A0A9IMR0_ARUDO; Uncharacterized protein
STRINGPavir.Gb02374.1.p3e-80(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP104438133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57150.14e-32bHLH family protein