PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462948658
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family bHLH
Protein Properties Length: 309aa    MW: 32378.5 Da    PI: 9.7698
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462948658genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH29.11.7e-09180221955
                HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
        HLH   9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                 + RR+ri +++ +L+el+P+      +K++ +++LekA+ Y+k Lq
  462948658 180 AKTRRERISERLRTLQELVPNG-----TKVDLVTMLEKAISYVKFLQ 221
                589*****************97.....8******************9 PP

2HLH28.42.9e-092252651055
                HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
        HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                + RR+ri +++ +L+el+P+      +K++ +++LekA+ Y+k Lq
  462948658 225 KTRRERISERLRTLQELVPNG-----TKVDLVTMLEKAISYVKFLQ 265
                78*****************97.....8******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.091171220IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.5E-11173225IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.32E-12173225No hitNo description
SuperFamilySSF474594.71E-12175225IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.9E-12177226IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.3E-6181221IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088812.76215264IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474597.59E-12225275IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.32E-11225269No hitNo description
PfamPF000102.2E-6225265IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.4E-10226272IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003539.1E-5227270IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 309 aa     Download sequence    Send to blast
MALVREHTAY GGGFDGADSS PFDALLGADA AALFGGYSSL DPASFTGGNV WGAGAGAAAS  60
VLAFDRAAAA GSGGEDDSDQ APVTSVGFDA TTGCFTLTER AASSGGAGRA FGLLFPSTSS  120
GSGGSPDRAA PVRASQKRSY PGVERQQDVS PKKPCGAGRK TSKPKPAPAV PTKDPQSLAA  180
KTRRERISER LRTLQELVPN GTKVDLVTML EKAISYVKFL QLQVKTRRER ISERLRTLQE  240
LVPNGTKVDL VTMLEKAISY VKFLQLQVKV LATDEFWPAQ GGKAPEISQV KEALDAILSS  300
SSSQRGQLN
Cis-element ? help Back to Top
SourceLink
PlantRegMap462948658
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1096624e-98AK109662.1 Oryza sativa Japonica Group cDNA clone:002-143-H06, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004953650.11e-102putative transcription factor bHLH086
SwissprotQ9C7072e-45BH083_ARATH; Transcription factor bHLH83
TrEMBLA0A2T7FB561e-103A0A2T7FB56_9POAL; Uncharacterized protein
STRINGSi019575m2e-97(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP141238117
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66470.14e-47ROOT HAIR DEFECTIVE6
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Coego A, et al.
    The TRANSPLANTA collection of Arabidopsis lines: a resource for functional analysis of transcription factors based on their conditional overexpression.
    Plant J., 2014. 77(6): p. 944-53
    [PMID:24456507]
  3. Lin CY, et al.
    Pathways involved in vanadate-induced root hair formation in Arabidopsis.
    Physiol Plant, 2015. 153(1): p. 137-48
    [PMID:24833217]
  4. Grierson C,Nielsen E,Ketelaarc T,Schiefelbein J
    Root hairs.
    Arabidopsis Book, 2014. 12: p. e0172
    [PMID:24982600]
  5. Kim CM,Dolan L
    ROOT HAIR DEFECTIVE SIX-LIKE Class I Genes Promote Root Hair Development in the Grass Brachypodium distachyon.
    PLoS Genet., 2016. 12(8): p. e1006211
    [PMID:27494519]
  6. Moro CF, et al.
    S-nitrosoglutathione promotes cell wall remodelling, alters the transcriptional profile and induces root hair formation in the hairless root hair defective 6 (rhd6) mutant of Arabidopsis thaliana.
    New Phytol., 2017. 213(4): p. 1771-1786
    [PMID:27880005]
  7. Bahmani R,Kim DG,Kim JA,Hwang S
    The Density and Length of Root Hairs Are Enhanced in Response to Cadmium and Arsenic by Modulating Gene Expressions Involved in Fate Determination and Morphogenesis of Root Hairs in Arabidopsis.
    Front Plant Sci, 2016. 7: p. 1763
    [PMID:27933081]
  8. Liao X,Lovett B,Fang W,St Leger RJ
    Metarhizium robertsii produces indole-3-acetic acid, which promotes root growth in Arabidopsis and enhances virulence to insects.
    Microbiology (Reading, Engl.), 2017. 163(7): p. 980-991
    [PMID:28708056]
  9. Feng Y, et al.
    Ethylene promotes root hair growth through coordinated EIN3/EIL1 and RHD6/RSL1 activity in Arabidopsis.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(52): p. 13834-13839
    [PMID:29233944]