PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462948128
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family bHLH
Protein Properties Length: 472aa    MW: 51953.6 Da    PI: 8.4001
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462948128genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH45.11.8e-14207252555
                HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
        HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                h ++Er+RR++iN++f eL +++P +     kK++Ka+iL  A++Y+k+Lq
  462948128 207 HIIAERKRREKINKRFIELSTVIPGL-----KKMDKATILSDATRYVKELQ 252
                889***********************.....9******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088816.202202251IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.37E-17206262IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.9E-17207260IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.13E-14207256No hitNo description
PfamPF000105.8E-12207252IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.5E-15208257IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 472 aa     Download sequence    Send to blast
MERFTYPRRV DKPRTPNHII SLLTILIVLL VGKMEDSSMF LQWALSTLQH GDPPPATPAP  60
AYDDDGGHTF SSSLTELLYS SSLSSSMPEK ATGHRPTSSW SSGDTDSGGG GRNASVTAAV  120
EIDGWSPSQN TVRYSAAAPP RCRTNQPVSW NFSSATARPS KEATPNSAAA SRATDDAGGS  180
VPQRVQEPPL PTRITAKGSG SSAPPFHIIA ERKRREKINK RFIELSTVIP GLKKMDKATI  240
LSDATRYVKE LQEKLKVHED GCCNGHRKVP RKKPCITVPD DEDRRSPTSY VAAMPTAATS  300
CRDTLPEIQV RISEGNVMVR IHCEDVKGVL VRLLAEVENL DLSIVHANAM PFSASTLIVN  360
ITAKASSPTH FTVEDEKHIV LWSDNHDLPV NTQYIRSKIG PTVEEGFNNT MADDIVEQLS  420
RALNQHIRNS KVEQEADRRD SRFNTFCRSI DRITCLKKSE GNRTFRDAMP IT
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1210215ERKRRE
2211216RKRREK
Cis-element ? help Back to Top
SourceLink
PlantRegMap462948128
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025792499.15e-90transcription factor bHLH18-like
TrEMBLA0A0A9SBV51e-108A0A0A9SBV5_ARUDO; Uncharacterized protein
STRINGPavir.Ia01059.1.p4e-84(Panicum virgatum)
STRINGGRMZM2G095899_P015e-84(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP92731143
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.12e-30bHLH family protein