PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462947903
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family B3
Protein Properties Length: 378aa    MW: 42533.1 Da    PI: 5.0471
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462947903genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B335.81.4e-11501241898
                --HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
         B3  18 lpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                +p +f ++h ++k  +++ +lede+gr  e  +   + +++  l++GW +F+  +++k+ D+v+F+l+++++f  +v ++r
  462947903  50 IPADFYQNH-LPK-LKTEFMLEDEDGRIHETIY--IGDRKGPGLSGGWGHFALFHNIKVDDVVIFQLKESKKF--KVYIVR 124
                899999777.443.5579***************..66666677***********************9877777..888877 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM010192.4E-537126IPR003340B3 DNA binding domain
SuperFamilySSF1019369.61E-1649125IPR015300DNA-binding pseudobarrel domain
CDDcd100171.88E-1350124No hitNo description
PfamPF023621.1E-850124IPR003340B3 DNA binding domain
PROSITE profilePS508639.71450126IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.105.9E-1450125IPR015300DNA-binding pseudobarrel domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 378 aa     Download sequence    Send to blast
GHELAIVPAP QQVTVHYGDT DHATKDVIPV EDEELAIVVA DVDAVPIEGI PADFYQNHLP  60
KLKTEFMLED EDGRIHETIY IGDRKGPGLS GGWGHFALFH NIKVDDVVIF QLKESKKFKV  120
YIVREKTLDA IDGAFSQQNL EVPKKRKSSK VGASYDVNSN KDMKATTFDH NVPQSEDSSV  180
ISEDPTDGIS FSNSGTDFDG MPSFSNFSIV VDNPVDCEFE EHQRRAYYEL CCSQKSYLHK  240
NLLRHLNPKL IVGVIEDTIS IAERIRACAE EASSREDFMI WKKTLESFEL LGMNVSFMVK  300
RVNGLLGLPA LSKDLPKYEK YKDLNLEQAH SREKLKALEL ELSTVKDSLR KIDADLGEMK  360
SSAKKRDLTL QELATAPW
Cis-element ? help Back to Top
SourceLink
PlantRegMap462947903
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014660753.11e-123B3 domain-containing protein Os01g0234100
SwissprotQ0JP991e-105Y1341_ORYSJ; B3 domain-containing protein Os01g0234100
TrEMBLA0A368QZQ91e-121A0A368QZQ9_SETIT; Uncharacterized protein
STRINGPavir.Eb00031.1.p1e-118(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP60802345
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42700.14e-13B3 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]