PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462947566
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family AP2
Protein Properties Length: 437aa    MW: 47067.6 Da    PI: 6.1363
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462947566genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2491.5e-15102148455
        AP2   4 kGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                +GV++++++grW+++I+d      + k+++lg f+ta  Aa+a+++a+ k++g
  462947566 102 RGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 148
                8*****************......55************************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103216.608100156IPR001471AP2/ERF domain
PfamPF008473.8E-8102148IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.3E-15102156IPR001471AP2/ERF domain
SuperFamilySSF541711.9E-14102157IPR016177DNA-binding domain
SMARTSM003802.7E-29102162IPR001471AP2/ERF domain
SMARTSM003800.019203252IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 437 aa     Download sequence    Send to blast
MVLDLNVESP ADSGTSSSSV LNSGDGGFRF GLLGSPDDED CSGDLAAPAA ASAGFMTRQL  60
FPVPSPLAQP EPEPAAAPVP VWQPRRVEDL VVAQRPGGGA DRGVTFYRRT GRWESHIWDC  120
GKQVYLGGFD TAHAAARAYD RAAIKFRGLE ADINFTLSDY EEDLKQELDQ GRVCAHTPTP  180
EHGFRKGELK IPRRHAARVV AGRRGWGSFL ARSMSILGSL TAKLKLQAYD RAALRFNGRE  240
AVTNFEPSSY NGGDALPDTE NEAIVDGDAV DLDLRISQPN VHDSKRSNPL SGLQLDSPES  300
SSTMASQPMS SSSPWPVYHQ STVVQPHHQR LYPSASPSFF PNYQERPMER RPELGPPSFP  360
NWGWQMQGSP HMPLLNSAAS SGFSTAVGGV PLPSHPPAPF RGPPVLLPPD RVTATVLGTA  420
ADILGVTYWS LPGAVVL
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor (By similarity). Involved in spikelet transition (Probable). Together with SNB, controls synergistically inflorescence architecture and floral meristem establishment via the regulation of spatio-temporal expression of B- and E-function floral organ identity genes in the lodicules and of spikelet meristem genes (PubMed:22003982). Prevents lemma and palea elongation as well as grain growth (PubMed:28066457). {ECO:0000250|UniProtKB:P47927, ECO:0000269|PubMed:22003982, ECO:0000269|PubMed:28066457, ECO:0000305|PubMed:26631749}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap462947566
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Target of miR172 microRNA mediated cleavage, particularly during floral organ development. {ECO:0000269|PubMed:22003982, ECO:0000305|PubMed:20017947, ECO:0000305|PubMed:26631749, ECO:0000305|PubMed:28066457}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025792819.11e-168AP2-like ethylene-responsive transcription factor TOE3 isoform X1
SwissprotQ84TB51e-114AP22_ORYSJ; APETALA2-like protein 2
TrEMBLA0A2T7BZ331e-167A0A2T7BZ33_9POAL; Uncharacterized protein
STRINGPavir.J23520.1.p1e-163(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP24483890
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28550.31e-43related to AP2.7
Publications ? help Back to Top
  1. Lee DY,An G
    Two AP2 family genes, supernumerary bract (SNB) and Osindeterminate spikelet 1 (OsIDS1), synergistically control inflorescence architecture and floral meristem establishment in rice.
    Plant J., 2012. 69(3): p. 445-61
    [PMID:22003982]
  2. Wang L, et al.
    Coordinated regulation of vegetative and reproductive branching in rice.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(50): p. 15504-9
    [PMID:26631749]
  3. Dai Z,Wang J,Zhu M,Miao X,Shi Z
    OsMADS1 Represses microRNA172 in Elongation of Palea/Lemma Development in Rice.
    Front Plant Sci, 2016. 7: p. 1891
    [PMID:28066457]