PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462947140
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family ERF
Protein Properties Length: 161aa    MW: 17364.8 Da    PI: 9.326
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462947140genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2605.5e-194798156
        AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
               ++y GVr+++ +gr++AeIrdp +   + r++lg+f+taeeAa a+++a+++l+g+
  462947140 47 TRYLGVRRRP-WGRYAAEIRDPAT---KERHWLGTFDTAEEAAVAYDRAARSLRGA 98
               5799******.**********843...4*************************995 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000184.84E-2747106No hitNo description
PROSITE profilePS5103221.56248105IPR001471AP2/ERF domain
SMARTSM003803.1E-3248111IPR001471AP2/ERF domain
SuperFamilySSF541711.44E-2148105IPR016177DNA-binding domain
PfamPF008473.8E-114897IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.4E-2948105IPR001471AP2/ERF domain
PRINTSPR003676.6E-94960IPR001471AP2/ERF domain
PRINTSPR003676.6E-97187IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009739Biological Processresponse to gibberellin
GO:0010030Biological Processpositive regulation of seed germination
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 161 aa     Download sequence    Send to blast
MNFSSYFFSS NSSSNKKSSS SSSSSSKCRQ QQAAAQQHQQ LPDGNTTRYL GVRRRPWGRY  60
AAEIRDPATK ERHWLGTFDT AEEAAVAYDR AARSLRGARA RTNFAYPDLP PGSSITPYLS  120
PDLTSADNSA QLLQPFYATD PAGAGGAALQ QNTAAAGDDY G
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-1949104662ATERF1
3gcc_A2e-1949104662ATERF1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00509DAPTransfer from AT5G13910Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap462947140
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7282751e-119KJ728275.1 Zea mays clone pUT6553 AP2-EREBP transcription factor (EREB125) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004975472.13e-65ethylene-responsive transcription factor LEP
TrEMBLK3YEC46e-64K3YEC4_SETIT; Uncharacterized protein
STRINGSi012587m1e-64(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP18853397
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13910.15e-25ERF family protein