PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462945759
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family bHLH
Protein Properties Length: 146aa    MW: 16258.4 Da    PI: 8.6554
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462945759genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH41.23.1e-1382127655
                HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
        HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                +++Er RR ri +++ +L+el+P+     +k  s a++L +Ave+Ik Lq
  462945759  82 SIAERERRTRISEKLRKLQELVPNM----DKQTSTADMLDLAVEHIKGLQ 127
                689*********************7....688*****************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.72376126IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.88E-1679140IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.67E-1280131No hitNo description
Gene3DG3DSA:4.10.280.103.1E-1581139IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.5E-1082127IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.1E-1382132IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 146 aa     Download sequence    Send to blast
SGESSGGAAA SRSFSGGFSI VGPWEESRDI IATLGAYDPQ FNGAMTSSAL EMAGMDRYLQ  60
LQQDQVPFKV RAKRGCATHP RSIAERERRT RISEKLRKLQ ELVPNMDKQT STADMLDLAV  120
EHIKGLQSEL QNLKHEQEKC TCCRKR
Cis-element ? help Back to Top
SourceLink
PlantRegMap462945759
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9547251e-113EU954725.1 Zea mays clone 1479278 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025808991.15e-87transcription factor bHLH128-like
SwissprotQ8H1024e-48BH128_ARATH; Transcription factor bHLH128
TrEMBLA0A1E5USQ63e-93A0A1E5USQ6_9POAL; Transcription factor bHLH128
STRINGPavir.Aa01423.1.p9e-91(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP115313141
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G05805.12e-47bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]