PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462945468
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family C3H
Protein Properties Length: 969aa    MW: 103824 Da    PI: 9.2574
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462945468genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH28.82.2e-094871427
               ---SGGGGTS--TTTTT-SS-SSS CS
    zf-CCCH  4 elCrffartGtCkyGdrCkFaHgp 27
               + C +++rtG C +G+rC+++H++
  462945468 48 PDCGYYLRTGACGFGERCRYNHPR 71
               78********************96 PP

2zf-CCCH36.77e-1296120327
                S---SGGGGTS--TTTTT-SS-SSS CS
    zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                ++ C ++++tGtCk+G++Ck++H++
  462945468  96 QPVCEYYLKTGTCKFGSNCKYHHPK 120
                789********************96 PP

3zf-CCCH37.73.5e-12140165227
                -S---SGGGGTS--TTTTT-SS-SSS CS
    zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                ++++C+++++tG+Ck+G++CkF+H++
  462945468 140 GEKECSYYMKTGHCKFGSTCKFHHPE 165
                7899********************96 PP

4zf-CCCH35.12.2e-11293319127
                --S---SGGGGTS--TTTTT-SS-SSS CS
    zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                +++++C+f+++tG+Ck+G++Ck++H++
  462945468 293 PGQPECQFYLKTGHCKFGATCKYHHPQ 319
                5789*********************97 PP

5zf-CCCH32.31.7e-10341365327
                S---SGGGGTS--TTTTT-SS-SSS CS
    zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                 ++C ++a++G+C+yG  Ck+ H++
  462945468 341 APPCAYYAQNGYCRYGVACKYDHPM 365
                689********************95 PP

6zf-CCCH23.78.6e-085735891127
                GTS--TTTTT-SS-SSS CS
    zf-CCCH  11 rtGtCkyGdrCkFaHgp 27 
                rtGtC yG+rC+++H++
  462945468 573 RTGTCAYGERCRYNHPR 589
                8**************96 PP

7zf-CCCH32.61.4e-10613639127
                --S---SGGGGTS--TTTTT-SS-SSS CS
    zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                ++++lC ++ ++G Ck+G++Ck+ H++
  462945468 613 PGQPLCEYYVKNGSCKFGSNCKYDHPR 639
                589**********************96 PP

8zf-CCCH32.81.2e-10658683227
                -S---SGGGGTS--TTTTT-SS-SSS CS
    zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                ++++C+++ +tG+Ck+G++CkF+H++
  462945468 658 GEKECSYYIKTGHCKFGNTCKFHHPE 683
                7899********************96 PP

9zf-CCCH36.58.4e-12808834127
                --S---SGGGGTS--TTTTT-SS-SSS CS
    zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                +++++C ++++tGtCk+G++Ck++H++
  462945468 808 PGQPECEHYMKTGTCKFGPTCKYHHPQ 834
                5789*********************97 PP

10zf-CCCH30.65.8e-10856880327
                S---SGGGGTS--TTTTT-SS-SSS CS
    zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                  +C ++a+ G+Ck+G++CkF H++
  462945468 856 SQPCAYYAQHGFCKFGPTCKFDHPM 880
                679********************95 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010312.8874472IPR000571Zinc finger, CCCH-type
SMARTSM003560.00144471IPR000571Zinc finger, CCCH-type
PfamPF006425.2E-74871IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.55E-55072IPR000571Zinc finger, CCCH-type
SMARTSM003565.6E-793120IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.17393121IPR000571Zinc finger, CCCH-type
PfamPF006421.3E-996120IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.96E-696122IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.9E-598122IPR000571Zinc finger, CCCH-type
SMARTSM003564.2E-6138165IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.915138166IPR000571Zinc finger, CCCH-type
PfamPF006421.5E-9140165IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.13E-5141165IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.1E-4144164IPR000571Zinc finger, CCCH-type
SMARTSM003564.1E-6292319IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.211292320IPR000571Zinc finger, CCCH-type
PfamPF006427.5E-9294319IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.96E-5296320IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.4E-4298320IPR000571Zinc finger, CCCH-type
SMARTSM003561.1E-6338365IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.145338366IPR000571Zinc finger, CCCH-type
PfamPF006423.5E-8341365IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.45E-5341367IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.4E-4343363IPR000571Zinc finger, CCCH-type
SMARTSM003565.9567589IPR000571Zinc finger, CCCH-type
PROSITE profilePS501038.953573590IPR000571Zinc finger, CCCH-type
PfamPF006424.1E-5573589IPR000571Zinc finger, CCCH-type
SMARTSM003561.5E-6612639IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.53612640IPR000571Zinc finger, CCCH-type
PfamPF006423.2E-8614639IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.44E-5615640IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.4E-5617639IPR000571Zinc finger, CCCH-type
SMARTSM003561.7E-4656683IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.605656684IPR000571Zinc finger, CCCH-type
PfamPF006423.0E-7658683IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.63E-6659683IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.9E-4662682IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.056807835IPR000571Zinc finger, CCCH-type
SMARTSM003562.5E-6807834IPR000571Zinc finger, CCCH-type
PfamPF006422.4E-9809834IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.41E-5811834IPR000571Zinc finger, CCCH-type
SMARTSM003564.9E-6853880IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.859853881IPR000571Zinc finger, CCCH-type
PfamPF006421.7E-7855880IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.37E-6855883IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.5E-4857878IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 969 aa     Download sequence    Send to blast
AARAPAPASK GRRISVDSGL TCGRANAWLQ GRCGGWGWTG AAAAGGGPDC GYYLRTGACG  60
FGERCRYNHP RDRGGTEFGG GVKNGAASDF PERLGQPVCE YYLKTGTCKF GSNCKYHHPK  120
QDGSVQSVVL NNNGFPLRPG EKECSYYMKT GHCKFGSTCK FHHPEFGGPP VTPGIYPPLQ  180
PASVPSPHAY ASLANWQMGR SPVVPGSYIQ GSYTPMMLSS GMVPLQGWSP YPASVNPVAS  240
GGTQQTVQAG PLYGMGNHGS STAIAYGSPY MPYSQSAGQS SNNQQEHVFP ERPGQPECQF  300
YLKTGHCKFG ATCKYHHPQD LSAPKSNYMF SPLCLPLRPG APPCAYYAQN GYCRYGVACK  360
YDHPMGTLGY NSSALPLSDM PIAPYPLGFP VAVLAPSSSS PDLRPDYIST KDPSVNQVAS  420
PVAAPEPVGV ILPKGGFPPD TIMRAQTSTT NGGSSSPGAS PRPRAEEKRK GEESPGSNRG  480
AGLLLLLCGA EKAGIFFFVR LCSGAPLPEL RSATRRRPIA RELLSAGGRE RARPRHRPRR  540
YVVRLDLAWG AASFAQLGVD AEAGARRRGG GVRTGTCAYG ERCRYNHPRD RRAAAAVNGV  600
GRTTSTVEYP ERPGQPLCEY YVKNGSCKFG SNCKYDHPRE GGFVPAVLNR SGYPLRPGEK  660
ECSYYIKTGH CKFGNTCKFH HPELGVPETS TIYPPVQPSA ISSAHPYTQL ATSQMGRPPF  720
VPGPFVPGSY PPMMLPSAVM PMQGWNPYIS HMNQVTPSGG QQTVQAPYGL SHQGPTSSVT  780
YGGHYPQLYH SAGPSSSNKQ GYGFPERPGQ PECEHYMKTG TCKFGPTCKY HHPQYFSALN  840
PNYMLNLLGL PLRPGSQPCA YYAQHGFCKF GPTCKFDHPM GSLSYSPSAS SLTDMPVAPY  900
PLSFPVAHMA PSAPSSDLRP QYAVTKEPSV NQQALPGTTY GHPGSITKVY APHTLIRSPA  960
STAAGMQAS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1528538RERARPRHRPR
Cis-element ? help Back to Top
SourceLink
PlantRegMap462945468
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003566542.20.0uncharacterized protein LOC100827764
SwissprotQ5NAW20.0C3H6_ORYSJ; Zinc finger CCCH domain-containing protein 6
TrEMBLA0A0D9UZ820.0A0A0D9UZ82_9ORYZ; Uncharacterized protein
STRINGLPERR01G09410.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27613889
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47850.31e-112C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Friedrichs G,Fikri M,Guo Y,Temps F
    Time-resolved cavity ringdown measurements and kinetic modeling of the pressure dependences of the recombination reactions of SiH2 with the alkenes C2H4, C3H6, and t-C4H8.
    J Phys Chem A, 2008. 112(25): p. 5636-46
    [PMID:18512897]
  3. Ning H,Gong C,Li Z,Li X
    Pressure-dependent kinetics of initial reactions in iso-octane pyrolysis.
    J Phys Chem A, 2015. 119(18): p. 4093-107
    [PMID:25868004]