PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462943852
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family bHLH
Protein Properties Length: 360aa    MW: 38347 Da    PI: 6.9274
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462943852genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH38.22.6e-12204249555
                HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
        HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                h+++Er RR++i +++ +L+el+P++      K +Ka++L + ++Y+k Lq
  462943852 204 HSIAERLRREKISDRMKNLQELVPNS-----NKTDKASMLDEIIDYVKFLQ 249
                99***********************7.....5******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.57E-13197253No hitNo description
SuperFamilySSF474592.36E-16197254IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.441199248IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.0E-16201253IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.6E-9204249IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.8E-14205254IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 360 aa     Download sequence    Send to blast
MSLADSASVF CSSNDSSGSE QSGLPRFLLG EQQVPASSAW SSAFQQISSL VGEETSQSFS  60
FGAVGNGDLL HDACTPDGKK YPQLGNVPSA QLQDDAKCNT RKMLSFAPGQ QLNTNFDNLQ  120
INQKEFSGLH HLNLSSLVSG QLSSFNATGA ALSPKQSNEV SSGINGLTAT FVTQSEVPNG  180
NANAGNGAPK PRIRARRGQA TDPHSIAERL RREKISDRMK NLQELVPNSN KTDKASMLDE  240
IIDYVKFLQL QVKSSGLLLS PKSGSRRAGG DMLGQSELRD GAVFEQEVVQ LMENNMTTAM  300
QYLQSKGLCL MPIALASAIS DQNGTSSMAV PPENGGKGDV KKVPIVMNPF SIAKEMKSTA
Cis-element ? help Back to Top
SourceLink
PlantRegMap462943852
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9749565e-73EU974956.1 Zea mays clone 461679 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004952733.10.0uncharacterized protein LOC101783147
TrEMBLK3YRP50.0K3YRP5_SETIT; Uncharacterized protein
STRINGSi016939m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP32543879
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30980.13e-51LJRHL1-like 2