PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462943536
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family bHLH
Protein Properties Length: 85aa    MW: 9633.92 Da    PI: 9.3331
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462943536genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH26.11.5e-0811521454
               HHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
        HLH 14 driNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54
               d+iN+ +++L+ llP+ + + ++ + s +  L++++ YIksL
  462943536 11 DEINELISKLQALLPEtSRRRNASRSSASKLLKETCSYIKSL 52
               68**************555888888****************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508889.623152IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.2E-91168IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474599.55E-91171IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.4E-61152IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 85 aa     Download sequence    Send to blast
MSGRRGRISD DEINELISKL QALLPETSRR RNASRSSASK LLKETCSYIK SLHREVGDLS  60
DRLSELMSTM DNDSPQAEII RSLLR
Functional Description ? help Back to Top
Source Description
UniProtAtypical and probable non DNA-binding bHLH transcription factor that integrates multiple signaling pathways to regulate cell elongation and plant development. {ECO:0000250}.
UniProtAtypical and probable non DNA-binding bHLH transcription that integrates multiple signaling pathways to regulate cell elongation and plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap462943536
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0639071e-100BT063907.2 Zea mays full-length cDNA clone ZM_BFc0119B05 mRNA, complete cds.
GenBankEU9645851e-100EU964585.1 Zea mays clone 280170 DNA binding protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010917019.15e-41transcription factor ILI5
SwissprotA2XD152e-35ILI3_ORYSI; Transcription factor ILI3
SwissprotQ10R472e-35ILI3_ORYSJ; Transcription factor ILI3
TrEMBLA0A1E5VT246e-47A0A1E5VT24_9POAL; Transcription factor ILI3
STRINGLPERR03G04710.13e-40(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP92838145
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G28857.12e-25bHLH family protein