PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462943512
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family bHLH
Protein Properties Length: 228aa    MW: 25340.5 Da    PI: 8.4852
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462943512genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH48.81.3e-152677155
               CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
        HLH  1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
               +r++h ++Er+RR+++N+ ++ Lr+l+P++   +s++ + a+i+  A++Y+++L+
  462943512 26 QRMNHIAVERNRRRQMNDYLAVLRSLMPPS---YSQRGDQASIVGGAINYVRELE 77
               79****************************...*******************995 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.101.4E-142479IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.42E-142481No hitNo description
PROSITE profilePS5088816.4182576IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474597.98E-182589IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.7E-132677IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.5E-113182IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 228 aa     Download sequence    Send to blast
MQQTTTTRRK RRRTKIVKNE EEIESQRMNH IAVERNRRRQ MNDYLAVLRS LMPPSYSQRG  60
DQASIVGGAI NYVRELEHIL QSLEVQKSLK DRGCNAEDGG QSPFAGFFSF PQYSTCSASH  120
GSNGHRVQAE STATADIEAS MVEGHASLKV QVQRRSSQLL RLTAGLQQLG LTTLHLNVST  180
AGATGMYSFS LKLEDECKLT SVEEIAEAVH EILGKIQAEQ AFVDTRTG
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1812RKRRR
2813RKRRRT
32637RMNHIAVERNRR
Cis-element ? help Back to Top
SourceLink
PlantRegMap462943512
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004983211.11e-110transcription factor bHLH96
SwissprotQ9C7T41e-69BH096_ARATH; Transcription factor bHLH96
TrEMBLA0A0A9JFW21e-109A0A0A9JFW2_ARUDO; Uncharacterized protein
TrEMBLK4AIE11e-109K4AIE1_SETIT; Uncharacterized protein
STRINGSi038653m1e-110(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP74138156
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72210.13e-60bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]