PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462940626
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family C3H
Protein Properties Length: 942aa    MW: 103509 Da    PI: 5.6856
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462940626genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH18.34.3e-06115135526
                --SGGGGTS--TTTTT-SS-SS CS
    zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                +C +f++ G C  Gd+C F H 
  462940626 115 PCYYFQK-GMCAKGDKCAFLHL 135
                7******.*************6 PP

2zf-CCCH18.34.3e-06411431526
                --SGGGGTS--TTTTT-SS-SS CS
    zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                +C +f++ G C  Gd+C F H 
  462940626 411 PCYYFQK-GMCAKGDKCAFLHL 431
                7******.*************6 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003560.0141543IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010311.2821544IPR000571Zinc finger, CCCH-type
PfamPF156634.8E-111670No hitNo description
PROSITE profilePS5010311.0284672IPR000571Zinc finger, CCCH-type
SMARTSM003562.54871IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.751110137IPR000571Zinc finger, CCCH-type
SMARTSM003564.5E-4111136IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.61E-5112134IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.2E-4115134IPR000571Zinc finger, CCCH-type
PfamPF146081.4115134No hitNo description
PfamPF156632.4E-8324366No hitNo description
PROSITE profilePS5010311.028342368IPR000571Zinc finger, CCCH-type
SMARTSM003562.5344367IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.751406433IPR000571Zinc finger, CCCH-type
SMARTSM003564.5E-4407432IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.61E-5408430IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.2E-4411430IPR000571Zinc finger, CCCH-type
PfamPF146081.4411430No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 942 aa     Download sequence    Send to blast
MDSDAGRPDE EEVRRRKNTD CIYFLASPLT CNKGSECDYR HSDTARMNPR DCWYWFNGNC  60
ANPKCSFRHP PLDNLLGAPA TPRAAQQSAP QVPAPAQAHG SVPPSGTGTT KQGIPCYYFQ  120
KGMCAKGDKC AFLHLPQAPG NSALQPTQKV FTSALQANPQ LKNSWTKPNS SAQQNTTSSI  180
FDKSKVSAHD GSPLQKQNLT SRVDHSSRIY QNHSNSYVRS GSAKHYQPQP SVQDDLAENG  240
MEVGEFVREP SANSGILASS ADDDAEQSFK GNHNNYHRSS GEQHNGMRQI HGSHEPERSY  300
RSSGETLLPE KRISHRESMP LGFAPTCMQG SECDYRHSDT ARMNPRDCWY WFNGNCANPK  360
CSFRHPPLDN LLGAPATPRA AQQSAPQVPA PAQAHGSVPP SGTGTTKQGI PCYYFQKGMC  420
AKGDKCAFLH LPQAPGNSAL QPTQKVFTSA LQANPQLKNS WTKPNSSAQQ NTTSSIFDKS  480
KVSAHDGSPL QKQNLTSRVD HSSRIYQNHS NSYVRSGSAK HYQPQPSVQD DLAENGMEVG  540
EFVREPSANS GILASSADDD AEQSFKGNHN NYHRSSGEQH NGMRQIHGSH EPERSYRSSG  600
ETLLPEKRIS HRESMPVTAG SSDLRQRLLK QRRISNPRST QAPDRHDAYL EDRHSSLGDE  660
HAAHDGLSRS RLHGRIKLPG ETSFIPGSRS ETGSDRLSPP KHTDLRGKLH ERLKPRSNED  720
IPDNPKCSVT KASIGEDAGS LNFAGPKSLA ELKAKKVVGS LGEDTVKSTA SSIGLAYRTP  780
EIVVSKDSSE PVPFEGPKPL SVILKRKRET PSENVVDSGS IQEEDTIGVN GESESGLQIL  840
ESDQIEVNME ANGEGEKEEE EDAFHPEDDV AYDDNLYPAD ENAAEDAGKD LEEPQDLEAE  900
QDYEYEEADV NADEDNDYQD YEDDDDFEDD DDFARKVGVV IS
Cis-element ? help Back to Top
SourceLink
PlantRegMap462940626
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004954519.10.0zinc finger CCCH domain-containing protein 19
SwissprotQ6K9770.0C3H19_ORYSJ; Zinc finger CCCH domain-containing protein 19
TrEMBLK3YQN50.0K3YQN5_SETIT; Uncharacterized protein
STRINGSi016579m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP130972123
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]