PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462939026
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family bHLH
Protein Properties Length: 285aa    MW: 30925.2 Da    PI: 10.1379
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462939026genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH30.37.7e-10761171055
                HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
        HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                r  R+++++  + Lr++lP +    s+K +Ka+iL +Av+YIk Lq
  462939026  76 REQRKEMKNMHNDLRSILPGL----SQKADKATILGEAVNYIKTLQ 117
                666999**************9....9*******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000836.47E-956121No hitNo description
PROSITE profilePS5088812.09366116IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.09E-1269136IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.6E-1171132IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.8E-774122IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.3E-775117IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 285 aa     Download sequence    Send to blast
MARSGYGFSS TKPTVDNITA GLKLASPVTN TPQEVHGSHD VTTASHSKAT PTGGGSSKRK  60
GAATEAEHTL HILKKREQRK EMKNMHNDLR SILPGLSQKA DKATILGEAV NYIKTLQDNI  120
RRLQRLKLEQ NHSQQLLQLG LSVAHLPSVS HGTAAPNARE LIMEDMVQSL NAQQTAASVS  180
GSSVMPRVAV NMLPSGPNVA MSVTGDDGFI NVCAPRQYSL MKKVCSVLEK HRIDLVRADI  240
SSDKYQSKIS IHARINSASA HFLEDITAED RYKLAVSEMV RSLAN
Cis-element ? help Back to Top
SourceLink
PlantRegMap462939026
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0A9J7H95e-62A0A0A9J7H9_ARUDO; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20053691
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49770.11e-21bHLH family protein