PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462936766
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family bHLH
Protein Properties Length: 226aa    MW: 23903.2 Da    PI: 7.3599
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462936766genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH16.91.1e-05821201154
                HHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
        HLH  11 rRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                 RR+ri +++  L+el+P+       K + a++L +  +Y+k L
  462936766  82 LRRERIAERMRALQELVPNT-----NKTDRAAMLDEILDYVKFL 120
                6******************7.....5****************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088812.34771120IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.15E-1181130IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.5E-1081131IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.4E-481126IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.46E-783125No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 226 aa     Download sequence    Send to blast
MAGGSYSAAA AGGGRTAGDQ PFSLALSLDA AAEASGSGKR LGGDVEGGKA DRDAVQLPGL  60
FPPVFGSGVQ PPHLRPTPPP QLRRERIAER MRALQELVPN TNKTDRAAML DEILDYVKFL  120
RLQVKVLSMS RLGGAGAVAQ LVSDIPLSVK GEASDSGSKQ QIWKKWSTDG TEKQVAKLME  180
DDIGAAMQFL QSKALCMMPI SLAMAIYDTQ QSQDGQPVKP EPNTPS
Functional Description ? help Back to Top
Source Description
UniProtRequired for ovule fertilization. {ECO:0000269|PubMed:15634699}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap462936766
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0683881e-168AK068388.1 Oryza sativa Japonica Group cDNA clone:J013145C08, full insert sequence.
GenBankAK1044121e-168AK104412.1 Oryza sativa Japonica Group cDNA clone:006-203-H10, full insert sequence.
GenBankEU9734111e-168EU973411.1 Zea mays clone 398294 BHLH transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001152044.11e-122uncharacterized protein LOC100285681
SwissprotO227681e-61UNE12_ARATH; Transcription factor UNE12
TrEMBLB6U8461e-121B6U846_MAIZE; BHLH transcription factor
STRINGGRMZM2G004356_P011e-121(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP26563580
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G02590.39e-62bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]