PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462935768
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family AP2
Protein Properties Length: 322aa    MW: 34946.1 Da    PI: 5.2186
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462935768genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2431.1e-13134184155
        AP2   1 sgykGVrwdkkrgrWvAeIrdpseng...krkrfslgkfgtaeeAakaaiaarkkleg 55 
                s+y+GV+ +k  grW+A+       g    +k+++lg f+++ eAa+a+++a+ +++g
  462935768 134 SKYRGVTLHK-CGRWEAR---M---GqllGKKYIYLGLFDSEIEAARAYDRAAIRFNG 184
                89********.7******...5...334336**********99**********99987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103211.5093099IPR001471AP2/ERF domain
SMARTSM003801.1E-458105IPR001471AP2/ERF domain
SuperFamilySSF541711.11E-767100IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.3E-96899IPR001471AP2/ERF domain
CDDcd000181.37E-127099No hitNo description
PfamPF008472.9E-9134184IPR001471AP2/ERF domain
SuperFamilySSF541711.11E-16134193IPR016177DNA-binding domain
CDDcd000184.66E-25134194No hitNo description
PROSITE profilePS5103215.988135192IPR001471AP2/ERF domain
SMARTSM003803.3E-30135198IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.6E-15135192IPR001471AP2/ERF domain
PRINTSPR003675.4E-6136147IPR001471AP2/ERF domain
PRINTSPR003675.4E-6174194IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 322 aa     Download sequence    Send to blast
MVLDLNAESP GGGEAASPTS SYAGGGGGGF FRDTGKQVYL GMFNLLVRAI FGELSALVQF  60
ADAAVPLLIG GFDTAHEAAR AYDRAAIKFR GLDADINFDL KDYEDDLKQM RNWSKEEFVH  120
ILRRQSTGFA RGSSKYRGVT LHKCGRWEAR MGQLLGKKYI YLGLFDSEIE AARAYDRAAI  180
RFNGKDSVTN FDPSCYDGDV PPDIEKDAIL DGDILDLNLR ISQPNVHHEK SDGILTGLRS  240
SCESPEASSV VSPQEAAMEE KRPETVGPPP FPPWAWQMQG FYPVPSPPAT AASSGFSTAT  300
GAGVPSTHPR QFANGYHFPP TA
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor (By similarity). Involved in spikelet transition (Probable). Together with IDS1, controls synergistically inflorescence architecture and floral meristem establishment via the regulation of spatio-temporal expression of B- and E-function floral organ identity genes in the lodicules and of spikelet meristem genes (PubMed:22003982). Prevents lemma and palea elongation as well as grain growth (PubMed:28066457). Regulates the transition from spikelet meristem to floral meristem, spikelet meristem determinancy and the floral organ development (PubMed:17144896). {ECO:0000250|UniProtKB:P47927, ECO:0000269|PubMed:17144896, ECO:0000269|PubMed:22003982, ECO:0000269|PubMed:28066457, ECO:0000305|PubMed:26631749}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap462935768
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Target of miR172 microRNA mediated cleavage, particularly during floral organ development. {ECO:0000269|PubMed:20017947, ECO:0000269|PubMed:22003982, ECO:0000305|PubMed:26631749, ECO:0000305|PubMed:28066457}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015647892.11e-118AP2-like ethylene-responsive transcription factor TOE3 isoform X2
SwissprotQ8H4431e-112AP23_ORYSJ; APETALA2-like protein 3
TrEMBLA0A0D9WX161e-123A0A0D9WX16_9ORYZ; Uncharacterized protein
STRINGLPERR07G06910.21e-123(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP24483890
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36920.24e-68AP2 family protein
Publications ? help Back to Top
  1. Lee DY,An G
    Two AP2 family genes, supernumerary bract (SNB) and Osindeterminate spikelet 1 (OsIDS1), synergistically control inflorescence architecture and floral meristem establishment in rice.
    Plant J., 2012. 69(3): p. 445-61
    [PMID:22003982]
  2. Wang L, et al.
    Coordinated regulation of vegetative and reproductive branching in rice.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(50): p. 15504-9
    [PMID:26631749]
  3. Dai Z,Wang J,Zhu M,Miao X,Shi Z
    OsMADS1 Represses microRNA172 in Elongation of Palea/Lemma Development in Rice.
    Front Plant Sci, 2016. 7: p. 1891
    [PMID:28066457]