PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462934244
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family bHLH
Protein Properties Length: 320aa    MW: 33978.6 Da    PI: 7.8941
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462934244genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH25.81.9e-08170214554
                HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
        HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                h+++Er RR+ri +++  L+el+P+       K + a++L +  +Y+k L
  462934244 170 HSIAERLRRERIAERMRALQELVPNT-----NKTDRAAMLDEILDYVKFL 214
                99***********************7.....5***************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000833.07E-10163219No hitNo description
SuperFamilySSF474597.2E-15163224IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.77165214IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.3E-14167225IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.8E-6170214IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.2E-9171220IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 320 aa     Download sequence    Send to blast
LPFLRRHTSR EQPASFVANH PKLRPLTGGP SLSVPSPSPA MAGQQPPGGA EDDFLEHFFA  60
FPSAGAGGHA GAGAGSSGDH PFPLALSLDA AAEASGGAKP DRDPVQLAGL FPPMFAGAGA  120
MQQTNLRPAP PHQVFHAQPK PGEGAMAPQP QPPAPRPKVR ARRGQATDPH SIAERLRRER  180
IAERMRALQE LVPNTNKTDR AAMLDEILDY VKFLRLQVKV LSMSRLGGAG AVAQLVADIP  240
LSVKGEASDG GSTQQVWEKW STDGTEKQVA KLMEEDIGAA MQFLQSKALC MMPISLAMAI  300
YDTQHPQEGH SLKPEPNSSS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1174179RLRRER
Functional Description ? help Back to Top
Source Description
UniProtRequired for ovule fertilization. {ECO:0000269|PubMed:15634699}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap462934244
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0960750.0FP096075.1 Phyllostachys edulis cDNA clone: bphyem116n19, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025804227.11e-162transcription factor UNE12
SwissprotO227684e-77UNE12_ARATH; Transcription factor UNE12
TrEMBLA0A2S3GW171e-161A0A2S3GW17_9POAL; Uncharacterized protein
STRINGPavir.J03221.1.p1e-161(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP26563580
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G02590.34e-57bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]