PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462932550
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family bHLH
Protein Properties Length: 230aa    MW: 24567.8 Da    PI: 5.7156
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462932550genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH11.30.000671721933354
                .TTS-STCHHHHHHHHHHHHHH CS
        HLH  33 apskKlsKaeiLekAveYIksL 54 
                ++++K++ a++L +A++Y+k L
  462932550 172 PGGTKMDTASMLDEAIHYVKFL 193
                5789****************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000834.89E-5169198No hitNo description
SuperFamilySSF474593.53E-7169214IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.9E-6169202IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 230 aa     Download sequence    Send to blast
MEFDLLNSCP EAQLELMKTM LQLEQLTALD PSLMSPISPP ISPVQTPPAH QQSHCFSSPP  60
PYTSPTTIST GYDHQDGQYA APAAYPFPGP EHPHDFYALS PGAVAVDAAL LLGSGSSSPS  120
SSSAADAIRE VIFHIAALQP VDDQLLVDPE ASRPPKRRNV RISKDPQSRL VPGGTKMDTA  180
SMLDEAIHYV KFLKSQVQSL ERAAALGAAY HPALHAPWQY AAAALPHGGM
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1152157RPPKRR
Cis-element ? help Back to Top
SourceLink
PlantRegMap462932550
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0922088e-46FP092208.1 Phyllostachys edulis cDNA clone: bphyem204g02, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004957004.19e-76transcription factor bHLH69
TrEMBLA0A3L6T9V04e-81A0A3L6T9V0_PANMI; Transcription factor bHLH69-like
STRINGSi030966m3e-75(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP31033682
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67060.12e-31bHLH family protein