PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462931826
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family bHLH
Protein Properties Length: 288aa    MW: 30099.1 Da    PI: 8.2496
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462931826genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH22.61.9e-071171531354
                HHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
        HLH  13 RdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                R+riN  +++Lr+llP+      +K +Ka+ L ++ +++k+L
  462931826 117 RQRINGHLAKLRSLLPNT-----TKTDKASLLAEVLDHVKEL 153
                89***************9.....8****************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.623104153IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.7E-6113159IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.96E-8117161IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.70E-8117156No hitNo description
PfamPF000106.1E-5117153IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.109.4E-8117160IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF550215.49E-5179234No hitNo description
Gene3DG3DSA:3.30.70.2603.0E-5179236No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 288 aa     Download sequence    Send to blast
MWDGGVEHHG AQDAAPHQLL PPWLGGAAPF AEPAAFGAGY DVFGGLAGLS HGGVFGFGFD  60
AAASAMQQRH QHEQQRAAEA GSGSGKAVVS GLLGSLQAEL GRMTAREMMD AKALAARQRI  120
NGHLAKLRSL LPNTTKTDKA SLLAEVLDHV KELKRQTSAV MLAVDAAVDG AGRLVVRASL  180
CCEDRADLIP DIVRALAALR LRARRAEITT LGGRVRSVLL ITADGGACDE AERAATSQGR  240
HECIASVQEA LRGVMDRRAA ASSDTSSSGG GSIKRQRMNY GAQEQCSV
Cis-element ? help Back to Top
SourceLink
PlantRegMap462931826
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0543309e-65BT054330.1 Zea mays full-length cDNA clone ZM_BFb0336N10 mRNA, complete cds.
GenBankBT0678039e-65BT067803.2 Zea mays full-length cDNA clone ZM_BFc0158M03 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002462365.11e-108transcription factor bHLH30
SwissprotQ9S7Y13e-60BH030_ARATH; Transcription factor bHLH30
TrEMBLC5XC821e-106C5XC82_SORBI; Uncharacterized protein
STRINGSb02g024460.11e-107(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP19183898
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68810.13e-47bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ohashi-Ito K, et al.
    A bHLH complex activates vascular cell division via cytokinin action in root apical meristem.
    Curr. Biol., 2014. 24(17): p. 2053-8
    [PMID:25131670]
  3. Katayama H, et al.
    A Negative Feedback Loop Controlling bHLH Complexes Is Involved in Vascular Cell Division and Differentiation in the Root Apical Meristem.
    Curr. Biol., 2015. 25(23): p. 3144-50
    [PMID:26616019]