PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462930340
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family bHLH
Protein Properties Length: 606aa    MW: 66860.6 Da    PI: 6.8258
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462930340genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.45.2e-13359405455
                HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
        HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                +h   ErrRR+++N++f  Lr+l+P       +K++ a+iL  ++eY+k+L+
  462930340 359 SHVLKERRRREKLNERFVVLRSLVPFV-----TKMDRASILADTIEYLKQLR 405
                79999*********************8.....8*****************95 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142152.7E-22178IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088816.761355404IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474598.64E-18358424IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.0E-17359417IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.1E-10359404IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000839.44E-14359409No hitNo description
SMARTSM003535.5E-15361410IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 606 aa     Download sequence    Send to blast
MCASYSFPPG LGLPGKAFAT RVHVWLSEAN KVDSKVFSRA ILAKTVACIP VADGVLEIGT  60
TEKVEEDIGL IQYARSIFMD QHGIHMMPTL SGHSTSNPIT HIDDPPLQIK REKHIVSTNV  120
QPQNLNPEDK RSSQMDEDDD QLDTECASDL ETNNEKGSRQ PAPLNYLSNE QATPYAGSSG  180
PMHVEVSDRA RNGCSSYMDE EIEVQLICQN TANAQTSLQG QDRPGQFDLL YDNLCSGYLL  240
ETSAEDQAIP PENAHYAETV LRILRYNMRQ QTIANIKAYL TVSTKSPFSR WSTERPAADL  300
QSMMVSECTT PQRMLKGILF SVNSSQCKSR GEAQSPEPRD GEGMSRSRRG QVQAELSASH  360
VLKERRRREK LNERFVVLRS LVPFVTKMDR ASILADTIEY LKQLRRRIQD LESRPRQMVG  420
GNVPPASSHD TRGYFTRAST GKRAAEASGS SSTGTAAEVQ VSIIESDALL ELRCPHRDGL  480
LLRIMQALHR DLRLEVTSVQ ASSAGGVLLA ELRAKGINTG TAAEVQVSII ESDALLELRC  540
PHRDGLLLRI MQALHRDLRL EVTSVQASAA GGVLLAELRA KVNEAHGRRC SITEVKRAIH  600
LILSSD
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1363368ERRRRE
2364369RRRREK
Cis-element ? help Back to Top
SourceLink
PlantRegMap462930340
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankZMU578992e-42U57899.1 Zea mays repressor-like protein (in1) gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022679989.10.0transcription factor TT8
TrEMBLA0A1E5VN500.0A0A1E5VN50_9POAL; Basic helix-loop-helix protein A
STRINGSi029106m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP88633036
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41315.12e-36bHLH family protein