PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462928929
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family C3H
Protein Properties Length: 571aa    MW: 67346 Da    PI: 9.0175
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462928929genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH19.32e-0695115424
                ---SGGGGTS--TTTTT-SS- CS
    zf-CCCH   4 elCrffartGtCkyGdrCkFa 24 
                ++C+f+++t  Ck+G+ CkF+
  462928929  95 PECQFYMKTEDCKFGAICKFN 115
                79******************6 PP

2zf-CCCH34.63.1e-11215239327
                S---SGGGGTS--TTTTT-SS-SSS CS
    zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                 ++C+f+++ G Ck+G  CkF+H++
  462928929 215 KPECQFYMKAGDCKFGVVCKFHHPK 239
                689********************96 PP

3zf-CCCH29.21.6e-09363383727
                SGGGGTS--TTTTT-SS-SSS CS
    zf-CCCH   7 rffartGtCkyGdrCkFaHgp 27 
                +f+++tG Ck+G  CkF+H++
  462928929 363 QFYMKTGDCKFGVVCKFHHPK 383
                59*****************96 PP

4zf-CCCH29.21.6e-09507527727
                SGGGGTS--TTTTT-SS-SSS CS
    zf-CCCH   7 rffartGtCkyGdrCkFaHgp 27 
                +f+++tG Ck+G  CkF+H++
  462928929 507 QFYMKTGDCKFGVVCKFHHPK 527
                59*****************96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501039.19791119IPR000571Zinc finger, CCCH-type
SMARTSM003564.392118IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.911212240IPR000571Zinc finger, CCCH-type
SMARTSM003561.9E-4212239IPR000571Zinc finger, CCCH-type
PfamPF006427.2E-8215239IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010310.042356384IPR000571Zinc finger, CCCH-type
SMARTSM003560.36356383IPR000571Zinc finger, CCCH-type
PfamPF006422.6E-6363383IPR000571Zinc finger, CCCH-type
SMARTSM003560.36500527IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010310.042500528IPR000571Zinc finger, CCCH-type
PfamPF006422.6E-6507527IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 571 aa     Download sequence    Send to blast
MKTKPECQFY MKTKPECQFY MKTKPECQFY MKTKPECQFY MKTKPECQFY MKTKPECQFY  60
MKTKPECQFY MKTKPECQFY RPDKPECQFY MKTKPECQFY MKTEDCKFGA ICKFNYPKDQ  120
KVSVHNCMWS SIELPVRLMV QNENSIIQCK SSCTALLHHQ PVRSQLLDIV FRPHIRSSDS  180
NTSSTFITSG RECHLIIPLL FAVHRENVFL NRPNKPECQF YMKAGDCKFG VVCKFHHPKD  240
RTFHVLNCVL SSIELPLRPG EPICTFYSRY EIMVQNENSI IQCKSSCTAL LHHQSVRSQL  300
LDVCWHMYHR IRIVFHPHIR SSESNPKRTL ITSCRECHLI IPLLFAVQKE NVFLNRPHKP  360
VRQFYMKTGD CKFGVVCKFH HPKDRTFHVL NCVLSSIELP LRPGEPICTF YSRYEIMVQN  420
ENSIIQCKSS CTALLHHQSV RSQLLDVCWH MYHRIQIVFH QHIRSSESNP KRTLITSCRE  480
CHLIIPLLFA VQKENVFLNR PHKPVRQFYM KTGDCKFGVV CKFHHPKDGT VPVPNCALTS  540
IELPLLPGEP MCTFYSRYRM FKFGPNLNSI I
Cis-element ? help Back to Top
SourceLink
PlantRegMap462928929
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G16540.35e-46zinc finger nuclease 3