PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462928926
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family C3H
Protein Properties Length: 129aa    MW: 15133.6 Da    PI: 9.0752
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462928926genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH35.71.4e-116590227
               -S---SGGGGTS--TTTTT-SS-SSS CS
    zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHgp 27
               + ++C+f+ +tG Ck+G  CkF+H++
  462928926 65 DKPECQFYTKTGDCKFGVVCKFHHPK 90
               6799********************96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010313.4886391IPR000571Zinc finger, CCCH-type
SMARTSM003562.2E-46490IPR000571Zinc finger, CCCH-type
PfamPF006422.3E-86590IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.03E-66692IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.3E-46990IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 129 aa     Download sequence    Send to blast
MYNLASSSTM CWHMYYRIWI VFRPHIRSSD SNTSRTFVTS GRECHLIIPL LFAVHRENVF  60
LNRPDKPECQ FYTKTGDCKF GVVCKFHHPK DRTVPVLNCA LSSIELPLRP GEPICTFYSR  120
YEMFKYGAK
Cis-element ? help Back to Top
SourceLink
PlantRegMap462928926
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004979251.11e-36zinc finger CCCH domain-containing protein 63 isoform X1
SwissprotQ2R4J41e-36C3H63_ORYSJ; Zinc finger CCCH domain-containing protein 63
TrEMBLA0A0A8Y5A64e-39A0A0A8Y5A6_ARUDO; Uncharacterized protein
TrEMBLA0A0A9UTZ31e-38A0A0A9UTZ3_ARUDO; Uncharacterized protein
STRINGPavir.Ha00517.1.p2e-38(Panicum virgatum)
STRINGSi026440m3e-36(Setaria italica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G16540.34e-36zinc finger nuclease 3
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]