PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462928917
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family C3H
Protein Properties Length: 199aa    MW: 22606.2 Da    PI: 8.0524
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462928917genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH24.93.6e-081181027
               GGTS--TTTTT-SS-SSS CS
    zf-CCCH 10 artGtCkyGdrCkFaHgp 27
               ++tG Ck+G+ CkF+H++
  462928917  1 MKTGDCKFGGVCKFHHPK 18
               89**************96 PP

2zf-CCCH35.91.2e-11137162227
                -S---SGGGGTS--TTTTT-SS-SSS CS
    zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                + ++C+f++++G Ck+G  C F+H++
  462928917 137 DKPECQFYMKNGDCKFGVVCEFHHPK 162
                6799********************96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF006424.9E-5118IPR000571Zinc finger, CCCH-type
SMARTSM0035699118IPR000571Zinc finger, CCCH-type
PROSITE profilePS501039.366119IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.084135163IPR000571Zinc finger, CCCH-type
SMARTSM003562.1E-4136162IPR000571Zinc finger, CCCH-type
PfamPF006422.3E-8137162IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 199 aa     Download sequence    Send to blast
MKTGDCKFGG VCKFHHPKDQ TVPVSNCALS SIELPLRPGE PMCTCYSRYG IMVQDENSII  60
QCKSSCTALL HHQPVRSQLL DVCWHKYHRI RIVFHPHIRS SESNPKRTLI TSCRECHLNY  120
TTVICSIEGE CIPSRPDKPE CQFYMKNGDC KFGVVCEFHH PKDGTVPVPC CALSSIELPL  180
CPGEPTCTFY SRYRMFKFG
Cis-element ? help Back to Top
SourceLink
PlantRegMap462928917
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G16540.31e-38zinc finger nuclease 3