PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462928394
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family bHLH
Protein Properties Length: 289aa    MW: 32401.2 Da    PI: 7.3682
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462928394genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH41.52.4e-1364111355
                HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
        HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                + h ++ErrRR+++ + f  L +++P +     +K +K++iL  +veY+k+L+
  462928394  64 QEHVIAERRRREKMQQQFVALATIVPDL-----TKTDKISILGSTVEYVKQLE 111
                5799***********************9.....9*****************96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.73561110IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.89E-1561123IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.7E-1164111IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.7E-1765123IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.83E-1166115No hitNo description
SMARTSM003531.9E-1267116IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 289 aa     Download sequence    Send to blast
MPSPPFGCLA LNNEPVQPSS SNMLSFSGQP PRTLSFSAGG DWPDEIEAAQ QVSERRSWPH  60
ANAQEHVIAE RRRREKMQQQ FVALATIVPD LTKTDKISIL GSTVEYVKQL EEKVSALKEQ  120
SATRASEPNR ISSDNDASWT NRSASPDAVS GYVPTVEASI HGDTVLLKIC CKEKRGVLVM  180
IYSEVENQGL SIINTSVLPF PDSCLSITIT AKARLLVLHS TSNIDMYISL EKQKSQQVRF  240
YYNYLKCVWI ILFFDWVWLQ PFLGIYTSIL VYSSMFTMKS LVKVLPCPN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16974ERRRRE
27075RRRREK
Cis-element ? help Back to Top
SourceLink
PlantRegMap462928394
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF3563921e-60KF356392.1 Neyraudia reynaudiana chloroplast, complete genome.
GenBankKT1683841e-60KT168384.1 Eragrostis minor voucher ISC:L.G. Clark 1333 plastid, complete genome.
GenBankKT1683851e-60KT168385.1 Eragrostis tef voucher RSA:A.L. Ingram:544 plastid, complete genome.
GenBankKT1683881e-60KT168388.1 Sporobolus michauxianus voucher CAN:P.M.Peterson:20865 plastid, complete genome.
GenBankKT1683891e-60KT168389.1 Sporobolus heterolepis voucher DEK:M.R. Duvall:s.n. plastid, complete genome.
GenBankKT1683901e-60KT168390.1 Zoysia macrantha voucher RSA:J.T. Columbus:5085 plastid, complete genome.
GenBankKT1683971e-60KT168397.1 Tenaxia guillarmodiae plastid, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021316601.12e-90transcription factor bHLH18
RefseqXP_021316605.12e-90transcription factor bHLH18
TrEMBLA0A3L6SAV42e-95A0A3L6SAV4_PANMI; Uncharacterized protein
STRINGORUFI03G09460.12e-77(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP64013149
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.14e-31bHLH family protein