PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462927211
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family LBD
Protein Properties Length: 245aa    MW: 27459.8 Da    PI: 9.4827
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462927211genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260103.91.4e-32124210287
     DUF260   2 CaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqql 87 
                C aCk+lrrkC++dC++ap f +e+ +++f +vhk+FGasn +kll+++p ++r+da+ +++yeA+ r+++PvyG+++ i++lq+q 
  462927211 124 CVACKFLRRKCVNDCIFAPFFSSEEgMENFVVVHKVFGASNTSKLLHQVPLDKRRDAALTICYEAKERISNPVYGCASYIMALQEQK 210
                9********************999879*********************************************************985 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089119.448122225IPR004883Lateral organ boundaries, LOB
PfamPF031956.6E-32124211IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 245 aa     Download sequence    Send to blast
MTPALHRLHA RQMIDYNKVL QGEEDAWGLF VWDGAFQKQL LWDDNSKIPD EMHYKVPRGI  60
KRKRYKKQKK LKNISCLIKK LGLLAYPRVM SSMVIGSGGG HGGPNGGSNT GGGGRGVERG  120
GGLCVACKFL RRKCVNDCIF APFFSSEEGM ENFVVVHKVF GASNTSKLLH QVPLDKRRDA  180
ALTICYEAKE RISNPVYGCA SYIMALQEQK SCRLGLYLVT TPLHIDRSYS DWVSALEDVV  240
MYHDN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A4e-28120209896LOB family transfactor Ramosa2.1
5ly0_B4e-28120209896LOB family transfactor Ramosa2.1
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16071KRKRYKKQKKLK
Cis-element ? help Back to Top
SourceLink
PlantRegMap462927211
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G03760.12e-38LOB domain-containing protein 20