PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462927009
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family MIKC_MADS
Protein Properties Length: 392aa    MW: 44648.6 Da    PI: 10.42
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462927009genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF892.6e-281059251
               ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
     SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
               rien++nrqvtfskRr g++KKA+EL +LCdaev +++fsstg+lye++s
  462927009 10 RIENSTNRQVTFSKRRSGLFKKAKELAILCDAEVGLVVFSSTGRLYEFAS 59
               9***********************************************86 PP

2SRF-TF892.6e-28188237251
                ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
     SRF-TF   2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 
                rien++nrqvtfskRr g++KKA+EL +LCdaev +++fsstg+lye++s
  462927009 188 RIENSTNRQVTFSKRRSGLFKKAKELAILCDAEVGLVVFSSTGRLYEFAS 237
                9***********************************************86 PP

3K-box73.84.8e-25259334984
      K-box   9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkke 84 
                 ++a+a+ +q+e+  L+++++nLq+ +R+llG++L+ L++k+Lq+Le++Le sl++iR kK++l+++qi+el +k 
  462927009 259 SASAEAKLWQREAGSLRQQLHNLQEHHRQLLGQQLSGLDVKDLQNLENKLEMSLRNIRLKKDQLMIDQIQELNRKV 334
                6788999*****************************************************************9995 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006632.099161IPR002100Transcription factor, MADS-box
SMARTSM004323.4E-40160IPR002100Transcription factor, MADS-box
SuperFamilySSF554559.16E-28262IPR002100Transcription factor, MADS-box
CDDcd002653.27E-35260No hitNo description
PRINTSPR004043.0E-28323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003191.9E-261057IPR002100Transcription factor, MADS-box
PRINTSPR004043.0E-282338IPR002100Transcription factor, MADS-box
PRINTSPR004043.0E-283859IPR002100Transcription factor, MADS-box
PROSITE profilePS5006632.24179239IPR002100Transcription factor, MADS-box
SMARTSM004323.4E-40179238IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.83E-32180268IPR002100Transcription factor, MADS-box
CDDcd002659.76E-43180256No hitNo description
PROSITE patternPS003500181235IPR002100Transcription factor, MADS-box
PfamPF003191.9E-26188235IPR002100Transcription factor, MADS-box
PfamPF014862.7E-23261334IPR002487Transcription factor, K-box
PROSITE profilePS5129713.893264372IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 392 aa     Download sequence    Send to blast
MGRGKIVIQR IENSTNRQVT FSKRRSGLFK KAKELAILCD AEVGLVVFSS TGRLYEFAST  60
RSADNRSNIP QLLIVRVRVT SARERRLYNG RVVQSFASKR LSITRKRDAS KRLVYSYICA  120
LGKQAPQGCN QSLKGISSCK ERERERERPA NQASPIGQRR ERDSISTYQI SAVLEVEEMG  180
RGKIVIQRIE NSTNRQVTFS KRRSGLFKKA KELAILCDAE VGLVVFSSTG RLYEFASTSM  240
KSVIERYNEA KEDHHTAISA SAEAKLWQRE AGSLRQQLHN LQEHHRQLLG QQLSGLDVKD  300
LQNLENKLEM SLRNIRLKKD QLMIDQIQEL NRKVYGRTVN ENPTGTTVRY SILNKDNENV  360
QVNLELSQPH NDEREESGTP SLGLQLQNDD KD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A1e-221270192MEF2C
5f28_B1e-221270192MEF2C
5f28_C1e-221270192MEF2C
5f28_D1e-221270192MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Cis-element ? help Back to Top
SourceLink
PlantRegMap462927009
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025821378.11e-114MADS-box transcription factor 23-like
SwissprotQ6VAM41e-88MAD23_ORYSJ; MADS-box transcription factor 23
TrEMBLA0A2T7D7M01e-113A0A2T7D7M0_9POAL; Uncharacterized protein
STRINGPavir.Fb01587.1.p1e-104(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP61435130
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37940.14e-75AGAMOUS-like 21
Publications ? help Back to Top
  1. Puig J, et al.
    Analysis of the expression of the AGL17-like clade of MADS-box transcription factors in rice.
    Gene Expr. Patterns, 2013 Jun-Jul. 13(5-6): p. 160-70
    [PMID:23466806]
  2. Yu C, et al.
    The effects of fluctuations in the nutrient supply on the expression of five members of the AGL17 clade of MADS-box genes in rice.
    PLoS ONE, 2014. 9(8): p. e105597
    [PMID:25140876]
  3. Wang H, et al.
    A Signaling Cascade from miR444 to RDR1 in Rice Antiviral RNA Silencing Pathway.
    Plant Physiol., 2016. 170(4): p. 2365-77
    [PMID:26858364]