PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462926670
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family C3H
Protein Properties Length: 789aa    MW: 86664.5 Da    PI: 5.1699
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462926670genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH18.53.5e-06115135526
                --SGGGGTS--TTTTT-SS-SS CS
    zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                +C +f++ G C  Gd+C F H 
  462926670 115 PCYYFQK-GMCAKGDKCAFLHL 135
                7******.*************6 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003560.0141543IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010311.2821544IPR000571Zinc finger, CCCH-type
PfamPF156633.9E-111670No hitNo description
PROSITE profilePS5010311.0284672IPR000571Zinc finger, CCCH-type
SMARTSM003562.54871IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.751110137IPR000571Zinc finger, CCCH-type
SMARTSM003564.5E-4111136IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.35E-5112134IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.6E-4115134IPR000571Zinc finger, CCCH-type
PfamPF146081.1115134No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 789 aa     Download sequence    Send to blast
MDSGAGRPDE EEVRRRKNTD CIYFLASPLT CNKGSECDYR HSDTARMNPR DCWYWFNGNC  60
ANPKCSFRHP PLDNLLGAPA TPRSAQQSAP QVPAPAQAHG SVPPSGTGTT KQGIPCYYFQ  120
KGMCAKGDKC AFLHLPQAPG NSAPQPTQKV NPQLKNSWTK PNSSAQQSTS SGLFDKSKVS  180
AHDGRPLQKQ NLTSRVDHSS RIYQNHSNSY VRSGSAKHYQ PRPSVDLAEN GMEVGEFVRE  240
PSANSGVLAG SADDDAEQSV KGNHNNYHRI SGEKYTGMRQ THGRHEPERS YRSSGETLLP  300
EKRISHKEPK PVTAGSSDLR HRLLKQRRIS NPRSTQAPDR HDAYLEDRHS SLGDEHAAHD  360
GLSRSRLHGR IKLPGETSFI PGSRSETGRD RGLRDRLSPP KHTDLRGKLH ERLKPRSNED  420
ISDNPKCLVT KASIGGDAGS LNFAGPKSLA ELKAKKDISD NPKCLVTKAS IGGDAGSLNF  480
AGPKSLAELK AKKVVGSSGG DAVKSTASSI GLAHRTSEIV VSKDSSEPVP FEGPMPLSVI  540
LKRKREAPSE NVVDSGSIRE EDTVGVNGES ENGLQILESD PIEVNMEANG EGEKEEEEEE  600
DAFHPEDDVA YDDNLYPAEE NAAEDAGNDL EEPQDLEAEQ DYEYEAADVN ADEDNDYQDY  660
EDDDFEDDDD FARKVGVRSS SIDVLGLPWF FFAAAAAARV EVCAADKAQP FASGAAEGIE  720
RDLQVNDVPD VLRDIDFLVT SWEMQAVVPV DILIIFILGA CHRRSFGDIF FIYRAEVNHI  780
WFLYWVLCQ
Cis-element ? help Back to Top
SourceLink
PlantRegMap462926670
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004954519.10.0zinc finger CCCH domain-containing protein 19
SwissprotQ6K9770.0C3H19_ORYSJ; Zinc finger CCCH domain-containing protein 19
TrEMBLK3YQN50.0K3YQN5_SETIT; Uncharacterized protein
STRINGSi016579m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP130972123
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]