PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462926496
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family B3
Protein Properties Length: 490aa    MW: 55031.6 Da    PI: 7.8426
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462926496genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B335.22.1e-112263041696
                EE--HHH.HTT---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
         B3  16 lvlpkkfaeehggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                l ++k++a+++   +++s+ +tl++  ++++W   +  r  s++ +l + W +Fv++n+++egD+++++ ++ ++++l+++v
  462926496 226 LGISKEYASAYF--PHKSTNVTLRTpGKSKKWHPIFYKRDESRKNMLMGQWLQFVRDNHVQEGDICLIEPTK-DGRRLMFSV 304
                7899*****997..457789*****5566*******668888889************************776.555567665 PP

2B341.32.8e-134154842489
                HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
         B3  24 eeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                 e         ++ +++ t++  +   + We k+ + +++++ +l +GW +F+++n+L++gD+++F+l++++ 
  462926496 415 LELgsryasvHLP-ARGETVV-LQCGRKIWETKMVIHNGRRW-FLNGGWPKFARDNDLRVGDICLFELKKNEA 484
                4444433432333.4554444.555889******77777766.6999********************998633 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.106.1E-18203302IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.51E-17205303IPR015300DNA-binding pseudobarrel domain
SMARTSM010192.6E-5210308IPR003340B3 DNA binding domain
CDDcd100176.81E-20210305No hitNo description
PROSITE profilePS508639.841211308IPR003340B3 DNA binding domain
PfamPF023629.2E-10225304IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.104.1E-19390483IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.14E-17391483IPR015300DNA-binding pseudobarrel domain
CDDcd100172.58E-19396490No hitNo description
SMARTSM010196.5E-4398490IPR003340B3 DNA binding domain
PfamPF023624.4E-11418487IPR003340B3 DNA binding domain
PROSITE profilePS5086311.928440490IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 490 aa     Download sequence    Send to blast
MPSAQCLVLL KSIDAATRYC LDKIVFDASL ADWLCYECLQ RLGEVTCSRS LEKVLSERRA  60
SHACFCSTSH QPIIKSVESA CDAEPWRNNM DSGANLTGVG NIPTVEKRSV DFVDTAHGAT  120
KSSENSTRFA ESQKGSCCHR EKTVKMTTTS TSFEESGEDI PSESESLESD DLQEPPGDNF  180
VLSRTSYLSE SQKKRVKVFI KETKPETTVF VAIMRRSNVQ PPGPSLGISK EYASAYFPHK  240
STNVTLRTPG KSKKWHPIFY KRDESRKNML MGQWLQFVRD NHVQEGDICL IEPTKDGRRL  300
MFSVYLLHLA ETQRGGACSQ MVDPYSGESR ATTALEVNIK EEQPTDGEPL PHESLESEDF  360
VCPCQPQYIV PCRNGLSKSQ KKIVDGRVRA IQSEVPICVA VMKNNNVGIA QKWMLELGSR  420
YASVHLPARG ETVVLQCGRK IWETKMVIHN GRRWFLNGGW PKFARDNDLR VGDICLFELK  480
KNEARLTMAI
Cis-element ? help Back to Top
SourceLink
PlantRegMap462926496
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004982416.10.0B3 domain-containing protein Os03g0619800
SwissprotQ6AV221e-102Y3196_ORYSJ; B3 domain-containing protein Os03g0619600
TrEMBLA0A368SHJ60.0A0A368SHJ6_SETIT; Uncharacterized protein
TrEMBLK4A8S20.0K4A8S2_SETIT; Uncharacterized protein
STRINGSi035278m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP58531172
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.18e-07B3 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]