PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462924773
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family AP2
Protein Properties Length: 310aa    MW: 34417.6 Da    PI: 9.275
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462924773genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.33.8e-18104153155
        AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                s+y+GV++++++grW+++I+d      + k+++lg f+ta+ Aa+a+++a+ k++g
  462924773 104 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAQAAARAYDQAAIKFRG 153
                78*******************......55************************997 PP

2AP237.36.7e-12196246155
        AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                s+++GV+++k  g+W+++I         +k+++lg ++t+ eAa+ +++a+ + +g
  462924773 196 SRFRGVTQHK-CGKWESRIGQlM----GKKYVYLGLYDTEMEAAQVYDKAAIRCFG 246
                789*******.7****9976633....25**********77**********98776 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541716.54E-16104162IPR016177DNA-binding domain
PfamPF008475.1E-10104153IPR001471AP2/ERF domain
PROSITE profilePS5103217.662105161IPR001471AP2/ERF domain
SMARTSM003801.9E-31105167IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.3E-17105161IPR001471AP2/ERF domain
SuperFamilySSF541716.21E-16196255IPR016177DNA-binding domain
PfamPF008471.1E-6196244IPR001471AP2/ERF domain
CDDcd000184.80E-23196256No hitNo description
SMARTSM003802.8E-31197260IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.1E-15197254IPR001471AP2/ERF domain
PROSITE profilePS5103214.592197254IPR001471AP2/ERF domain
PRINTSPR003673.0E-5198209IPR001471AP2/ERF domain
PRINTSPR003673.0E-5236256IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 310 aa     Download sequence    Send to blast
MAATKRAFHG VDDGIGHDDE LQGARPEEGS RMIFGFPVPG PHSRPAAVTQ QFFPATVAVG  60
TPAPAPQHQQ PAMEQCHAVA AVAADPWARP ALRKSRRGPR SRSSQYRGVT FYRRTGRWES  120
HIWDCGKQVY LGGFDTAQAA ARAYDQAAIK FRGVSADINF TLDDYKDDIK KMKNFSKEEF  180
VQVLRRQGAG FVRGSSRFRG VTQHKCGKWE SRIGQLMGKK YVYLGLYDTE MEAAQVYDKA  240
AIRCFGKEAV TNFDPQTYDN ELQLQYGELD LELSLGIAGG GRGTVADEVF NSAPGKQRTS  300
LTVHQHHQQC
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor (By similarity). Involved in spikelet transition (Probable). Prevents lemma and palea elongation as well as grain growth (PubMed:28066457). {ECO:0000250|UniProtKB:P47927, ECO:0000269|PubMed:28066457, ECO:0000305|PubMed:26631749}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap462924773
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Target of miR172 microRNA mediated cleavage, particularly during floral organ development. {ECO:0000305|PubMed:26631749, ECO:0000305|PubMed:28066457}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0403461e-162BT040346.1 Zea mays full-length cDNA clone ZM_BFc0084O08 mRNA, complete cds.
GenBankKJ7269411e-162KJ726941.1 Zea mays clone pUT3487 AP2-EREBP transcription factor (EREB55) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025810716.11e-136AP2-like ethylene-responsive transcription factor TOE3 isoform X1
SwissprotA0A0N7KMH01e-133AP24_ORYSJ; APETALA2-like protein 4
TrEMBLA0A3L6RYR21e-143A0A3L6RYR2_PANMI; Uncharacterized protein
STRINGLPERR06G18460.11e-137(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP118213439
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36920.21e-82AP2 family protein
Publications ? help Back to Top
  1. Wang L, et al.
    Coordinated regulation of vegetative and reproductive branching in rice.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(50): p. 15504-9
    [PMID:26631749]
  2. Dai Z,Wang J,Zhu M,Miao X,Shi Z
    OsMADS1 Represses microRNA172 in Elongation of Palea/Lemma Development in Rice.
    Front Plant Sci, 2016. 7: p. 1891
    [PMID:28066457]