PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462923965
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family HRT-like
Protein Properties Length: 514aa    MW: 57023.2 Da    PI: 9.8472
Description HRT-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462923965genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HRT-like56.35.4e-18302332131
   HRT-like   1 iCGviledGsvCkrqPvkgRKRCeeHKGmRi 31 
                +CGv ledGs C ++Pv+gRKRC  HKG+Ri
  462923965 302 VCGVVLEDGSSCLEEPVQGRKRCNLHKGRRI 332
                7*****************************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004651.2E-472174IPR000305GIY-YIG nuclease superfamily
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:2000033Biological Processregulation of seed dormancy process
GO:0097100Molecular Functionsupercoiled DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 514 aa     Download sequence    Send to blast
MPAATAAVRL KREDCPRTKH DSLFSPWKVL VGPSDWEDHA AGKEGVQRYR TRNLPDNFPG  60
LYELGVAAAS DEGLRARRRD SRSVVVVYLG QADSVRARLQ QYGRSGSHLD TGNSAGKNEV  120
NALATGTGLF REVFARGYSV VFRCALMDNK QEAEKTEAQL LRVFDYAWNK LQNGACRREE  180
VLLKLEQISH RSSLLSRVRH MKQTIFGEKA GIKIKGGGSV DTPSGIMRSM IPRVRTFVRF  240
RPHLVNSDDG EGETIDIPWN RTYQGNTCGN RQAHGRRSEG YKVKRIDVAK RRTVPIQYSN  300
SVCGVVLEDG SSCLEEPVQG RKRCNLHKGR RIKGKPYCSS SSYPCQVEVS NAESVPQLSE  360
NLNNSDQAQE SELMSKNLAT ALKEESRQSS CFEAKEVKTG EAPTEHGTHE TAGFAGIYGQ  420
KSSHAESQSQ EEQPSGRMWF ELLKAQTKSV STHPLRGPRC QTRVADGGAT KNDGTFGMVP  480
NAGRKRCEKL SEKLNCTPKN SLVPMDANLA SRRF
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1482489GRKRCEKL
Cis-element ? help Back to Top
SourceLink
PlantRegMap462923965
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025802669.10.0protein EFFECTOR OF TRANSCRIPTION 2-like
TrEMBLA0A2T7EY060.0A0A2T7EY06_9POAL; Uncharacterized protein
STRINGSi029353m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP79483443
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56780.14e-57effector of transcription2