PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462923567
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family LBD
Protein Properties Length: 203aa    MW: 20882.7 Da    PI: 8.1504
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462923567genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260107.51e-33271221101
     DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallke 99 
                +C aCk+lrr+C+++Cv+apyf ++q +++fa++hk+FGasn +kll++lp      a+ +++yeA+ar+rdPvyG+v+ i++lqqq++ l+a+l ++k+
  462923567  27 PCGACKFLRRRCVPECVFAPYFSSDQgAARFAAIHKVFGASNASKLLSHLP------AVVTITYEAQARLRDPVYGCVAQIFALQQQVAILQAQLMQAKA 120
                7************************989*********************76......799***********************************99998 PP

     DUF260 100 el 101
                +l
  462923567 121 QL 122
                75 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089118.70226122IPR004883Lateral organ boundaries, LOB
PfamPF031952.2E-3227119IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010311Biological Processlateral root formation
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 203 aa     Download sequence    Send to blast
MAGAANGGGC AAAAAAAAGG APGAGSPCGA CKFLRRRCVP ECVFAPYFSS DQGAARFAAI  60
HKVFGASNAS KLLSHLPAVV TITYEAQARL RDPVYGCVAQ IFALQQQVAI LQAQLMQAKA  120
QLACGGGVSP VSHHQWSSDN SSSIGSLLRS QDNACSFPGA AISPDLMASF RDDVAMQQHC  180
AKADAGDLQY LAQAIMRSPN YSM
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00309DAPTransfer from AT2G42430Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0641872e-52AK064187.1 Oryza sativa Japonica Group cDNA clone:002-104-C02, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002454795.17e-89hypothetical protein SORBIDRAFT_04g037550
SwissprotQ9SLB79e-54LBD16_ARATH; LOB domain-containing protein 16
TrEMBLC5XVZ88e-89C5XVZ8_SORBI; Putative uncharacterized protein Sb04g037550
STRINGSb04g037550.12e-88(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP105993443
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G03760.18e-33LOB domain-containing protein 20