PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462923309
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family AP2
Protein Properties Length: 272aa    MW: 29278.6 Da    PI: 8.1952
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462923309genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP235.62.3e-1177133155
        AP2   1 sgykGVrwdkkrgrWvAeIrd.pse.ng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                s+++GV++ k++g+++A+++d  s+  g krk  + g++ t+e+Aaka++ a++k++g
  462923309  77 SRFHGVTRLKWSGKYEAHLWDnTSQvEGrKRKGKH-GSYVTEEQAAKAHDLAALKYWG 133
                789******************55558777778888.999999**************98 PP

2AP251.33e-16178231155
        AP2   1 sgykGVrwdkkrgrWvAeIrdpseng.kr..krfslgkfgtaeeAakaaiaarkkleg 55 
                s y+GV+++k +g+W A+I      g  r  k ++lg+f t+eeAa+a++ a+ +l+g
  462923309 178 SSYRGVTRRK-DGKWQARIGKI---GeSRdtKDIYLGTFETEEEAAEAYDIAAIELRG 231
                67*****999.9******9885...332236*************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541717.85E-1177143IPR016177DNA-binding domain
PfamPF008479.8E-877133IPR001471AP2/ERF domain
SMARTSM003801.9E-1278149IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.5E-978143IPR001471AP2/ERF domain
PROSITE profilePS5103215.25178143IPR001471AP2/ERF domain
SuperFamilySSF541712.94E-18178241IPR016177DNA-binding domain
PfamPF008471.5E-11178231IPR001471AP2/ERF domain
SMARTSM003803.8E-28179245IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.9E-20179239IPR001471AP2/ERF domain
PROSITE profilePS5103219.309179239IPR001471AP2/ERF domain
PRINTSPR003673.8E-8180191IPR001471AP2/ERF domain
PRINTSPR003673.8E-8221241IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 272 aa     Download sequence    Send to blast
MAAPEPNSPG PTATPPSPPP EERHGDAPNA PAASGDSALA VGGGEERKPA AGASGGGAGG  60
GKLVAEAMRK YAAPRSSRFH GVTRLKWSGK YEAHLWDNTS QVEGRKRKGK HGSYVTEEQA  120
AKAHDLAALK YWGTGPNTKL NFNVTDYEKE IEIMKTMSQD EFVAYIRRQS SCFSRGTSSY  180
RGVTRRKDGK WQARIGKIGE SRDTKDIYLG TFETEEEAAE AYDIAAIELR GVHAVTNFDI  240
SNYCEDGLTK LEGPSEVAKL EGPSKAMKLA GQ
Functional Description ? help Back to Top
Source Description
UniProtActs as positive regulator of adventitious (crown) root formation by promoting its initiation. Promotes adventitious root initiation through repression of cytokinin signaling by positively regulating the two-component response regulator RR1. Regulated by the auxin response factor and transcriptional activator ARF23/ARF1. {ECO:0000269|PubMed:21481033}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap462923309
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by auxin. {ECO:0000269|PubMed:21481033}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY6851180.0AY685118.1 Oryza sativa (japonica cultivar-group) transcription factor AP2D9 (AP2D9) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004977550.11e-156AP2-like ethylene-responsive transcription factor AIL1
SwissprotQ84Z023e-66CRL5_ORYSJ; AP2-like ethylene-responsive transcription factor CRL5
TrEMBLK3Y9551e-154K3Y955_SETIT; Uncharacterized protein
STRINGSi010747m1e-155(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP78643548
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72570.11e-55AP2 family protein
Publications ? help Back to Top
  1. Kitomi Y, et al.
    The auxin responsive AP2/ERF transcription factor CROWN ROOTLESS5 is involved in crown root initiation in rice through the induction of OsRR1, a type-A response regulator of cytokinin signaling.
    Plant J., 2011. 67(3): p. 472-84
    [PMID:21481033]
  2. Li P,Xue H
    Structural characterization and expression pattern analysis of the rice PLT gene family.
    Acta Biochim. Biophys. Sin. (Shanghai), 2011. 43(9): p. 688-97
    [PMID:21807632]