PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462923166
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family ERF
Protein Properties Length: 212aa    MW: 23064.1 Da    PI: 11.7063
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462923166genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP250.74.3e-1684126955
        AP2   9 dkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                ++ +grWvAeI+d      ++ r++lg+f+taeeAa+a+++a+  l+g
  462923166  84 RP-SGRWVAEIKDtI----QKIRVWLGTFDTAEEAARAYDEAACLLRG 126
                56.7*********33....35**********************99998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003801.4E-3159140IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.107.4E-65981IPR001471AP2/ERF domain
PROSITE profilePS5103219.13759134IPR001471AP2/ERF domain
PRINTSPR003672.1E-86071IPR001471AP2/ERF domain
SuperFamilySSF541714.97E-1783134IPR016177DNA-binding domain
CDDcd000186.89E-2583133No hitNo description
Gene3DG3DSA:3.30.730.108.2E-2483133IPR001471AP2/ERF domain
PfamPF008471.4E-1083126IPR001471AP2/ERF domain
PRINTSPR003672.1E-8100116IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 212 aa     Download sequence    Send to blast
MSMERKRKAF DAVGDIDGDA LSPPPSLVSM DACTWTSSGS STTMAAMAAA QQQHRGRKRF  60
VGVRQRPSGR WVAEIKDTIQ KIRRPSGRWV AEIKDTIQKI RVWLGTFDTA EEAARAYDEA  120
ACLLRGANTR TNFWPRPSPP AHPVPPPPPA HIPATTSPPA LPSKVTNLLL VRLRARNQQQ  180
LVNAPAAAPX XXXXXXXXAR TAAAASSRST TT
Cis-element ? help Back to Top
SourceLink
PlantRegMap462923166
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126202e-68CP012620.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 12 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020171738.12e-53uncharacterized protein LOC109757323
TrEMBLA0A1E5WFR24e-58A0A1E5WFR2_9POAL; Uncharacterized protein
STRINGTraes_5DS_1BDB9837E.11e-52(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP54823052
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G19790.16e-19related to AP2 11