PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462922401
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family AP2
Protein Properties Length: 484aa    MW: 53230 Da    PI: 8.0381
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462922401genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP236.41.3e-11316362555
        AP2   5 GVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                 Vr +++ grW A+I  +     +k  +lg+f t eeAa+a++ a+ k++g
  462922401 316 SVR-HHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 362
                688.5569******988532...5************************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003806.8E-18129251IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.108.8E-10129151IPR001471AP2/ERF domain
PROSITE profilePS5103214.21129245IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.108.8E-10209246IPR001471AP2/ERF domain
SuperFamilySSF541713.01E-8212247IPR016177DNA-binding domain
PROSITE profilePS5103216.924313370IPR001471AP2/ERF domain
PRINTSPR003672.3E-5314325IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.0E-16315371IPR001471AP2/ERF domain
SMARTSM003805.6E-26317376IPR001471AP2/ERF domain
PfamPF008473.4E-6317362IPR001471AP2/ERF domain
SuperFamilySSF541712.48E-15317372IPR016177DNA-binding domain
CDDcd000181.69E-20317372No hitNo description
PRINTSPR003672.3E-5352372IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 484 aa     Download sequence    Send to blast
MDMDMSSTYP HHWLSFSLSN NYQHGLLEAF SNSSSAPQLG EEGAVEETPK MEDFLGGVGG  60
TGAPPPGPAE DQLGCGGELG SIAAGFLRQY PATGTPENPG AVTIAMGTDV AESDQARRPA  120
ETFGQRTSIY RGVTRHRWTG RYEAHLWDNS CRREGQSRKG RQGMCLHVTD LSKKPAKAFY  180
LGISTATLTQ FGFTFGYQIF FSGTFENKLN WGKHVGGYDK EDKAARAYDL AALKYWGPTT  240
TTNFPVSNYE KELEEMKSMT RQEFIASLRR KSSGFSRGAS IYRGVTSLNN DSVQGSVQHI  300
EPFGQIFVNN AIFFMSVRHH QHGRWQARIG RVAGNKDLYL GTFSTQEEAA EAYDIAAIKF  360
RGLNAVTNFD MSRYDVDSIL SSDLPVGGGA ASRASKFPSD SLSPADAGAM LTGLASQAMP  420
PSEKDYWSLL ALHYQQQQQQ QQQQFSASAF DAYGSGVNVA QPQRQQQQRR RHVGCHHRSN  480
GTAR
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Involved in the regulation of floral organs size. {ECO:0000250, ECO:0000269|PubMed:15988559}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap462922401
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004965682.10.0AP2-like ethylene-responsive transcription factor AIL5
SwissprotQ6PQQ31e-114AIL5_ARATH; AP2-like ethylene-responsive transcription factor AIL5
TrEMBLA0A1E5V5G50.0A0A1E5V5G5_9POAL; AP2-like ethylene-responsive transcription factor AIL5
STRINGSi008325m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP79738151
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57390.11e-109AINTEGUMENTA-like 5
Publications ? help Back to Top
  1. Todd J,Post-Beittenmiller D,Jaworski JG
    KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana.
    Plant J., 1999. 17(2): p. 119-30
    [PMID:10074711]
  2. Molitor AM,Bu Z,Yu Y,Shen WH
    Arabidopsis AL PHD-PRC1 complexes promote seed germination through H3K4me3-to-H3K27me3 chromatin state switch in repression of seed developmental genes.
    PLoS Genet., 2014. 10(1): p. e1004091
    [PMID:24465219]
  3. Feng J,Chen D,Berr A,Shen WH
    ZRF1 Chromatin Regulators Have Polycomb Silencing and Independent Roles in Development.
    Plant Physiol., 2016. 172(3): p. 1746-1759
    [PMID:27630184]
  4. Santuari L, et al.
    The PLETHORA Gene Regulatory Network Guides Growth and Cell Differentiation in Arabidopsis Roots.
    Plant Cell, 2016. 28(12): p. 2937-2951
    [PMID:27920338]
  5. Du Y,Scheres B
    PLETHORA transcription factors orchestrate de novo organ patterning during Arabidopsis lateral root outgrowth.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(44): p. 11709-11714
    [PMID:29078398]