PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462920937
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family bZIP
Protein Properties Length: 369aa    MW: 39735.1 Da    PI: 6.2385
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462920937genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_133.59.5e-11176234563
                CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
     bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                kr++r   NR +A rs +RK  +i eLe+kv++L++e ++L  +l+ l+     l++e+
  462920937 176 KRAKRIWANRQSAARSKERKMRYISELERKVQTLQTEATTLSAQLSLLQRDTTGLTTEN 234
                9**********************************************998887777766 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003387.2E-17172236IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.967174237IPR004827Basic-leucine zipper domain
PfamPF001702.0E-9176233IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1706.9E-11176231No hitNo description
SuperFamilySSF579592.67E-11176228No hitNo description
CDDcd147039.10E-26177226No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 369 aa     Download sequence    Send to blast
MPGDGGCGDG LPPQSSRTAG APPKSATPPP EYDISRMPDF PTRNTGHRRA HSEILSLPDD  60
LDLSAPGGGD GPSLSDENDE ELFSMFLDVD KLNSACGASS EAEAESSSAA GDVGEGNGPG  120
HAPRPRHQHS QSMDESMSIK AEELVGAPGM EGMSPAEAKK AVSAAKLAEL ALVDPKRAKR  180
IWANRQSAAR SKERKMRYIS ELERKVQTLQ TEATTLSAQL SLLQRDTTGL TTENSELKIR  240
LQTMEQQVHL QDALNDTLRT EVQRLKVATG QVSNGGGGMS MNFGHMPRAF GGNQQMFHNN  300
QSMQSMLATH QLQQLQLHPQ PQQQSLHPQH QQQSLQSLQA QQLQQAAREF KMKGAMGSLG  360
QWGDGSSGS
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor probably involved in vascular development and shoot tissue organization. Binds to the DNA sequence 5'-CCGAGTGTGCCCCTGG-3' present in the promoter region Box II of the phloem-specific rice tungro bacilliform virus (RTBV) promoter. May regulate tissue-specific expression of the RTBV promoter and virus replication. {ECO:0000269|PubMed:11390974, ECO:0000269|PubMed:12855676, ECO:0000269|PubMed:14704272, ECO:0000269|PubMed:9311985}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00126DAPTransfer from AT1G06070Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap462920937
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025804457.10.0transcription factor RF2a-like
SwissprotQ69IL41e-151RF2A_ORYSJ; Transcription factor RF2a
TrEMBLA0A2T7EUP00.0A0A2T7EUP0_9POAL; Uncharacterized protein
STRINGPavir.J04459.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP42693868
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G06070.14e-90bZIP family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Dai S,Zhang Z,Bick J,Beachy RN
    Essential role of the Box II cis element and cognate host factors in regulating the promoter of Rice tungro bacilliform virus.
    J. Gen. Virol., 2006. 87(Pt 3): p. 715-22
    [PMID:16476995]
  3. Liu Y,Dai S,Beachy RN
    Role of the C-terminal domains of rice (Oryza sativa L.) bZIP proteins RF2a and RF2b in regulating transcription.
    Biochem. J., 2007. 405(2): p. 243-9
    [PMID:17371296]
  4. Dai S, et al.
    Transgenic rice plants that overexpress transcription factors RF2a and RF2b are tolerant to rice tungro virus replication and disease.
    Proc. Natl. Acad. Sci. U.S.A., 2008. 105(52): p. 21012-6
    [PMID:19104064]
  5. Ordiz MI,Yang J,Barbazuk WB,Beachy RN
    Functional analysis of the activation domain of RF2a, a rice transcription factor.
    Plant Biotechnol. J., 2010. 8(7): p. 835-44
    [PMID:20408988]