PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462920884
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family bHLH
Protein Properties Length: 191aa    MW: 20958.1 Da    PI: 9.8848
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462920884genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH278.1e-094185554
               HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
        HLH  5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
               h+++Er RR+ri +++  L+el+P+       K + a++L +  +Y+k L
  462920884 41 HSIAERLRRERIAERMRALQELVPNT-----NKTDRAAMLDEILDYVKFL 85
               99***********************7.....5****************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000835.21E-103490No hitNo description
SuperFamilySSF474592.62E-153495IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.773685IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.3E-143896IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.1E-64185IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.2E-94291IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009567Biological Processdouble fertilization forming a zygote and endosperm
GO:0031347Biological Processregulation of defense response
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 191 aa     Download sequence    Send to blast
MANLQVFHAQ QPKQGGAGVG PQPPAPRPKV RARRGQATDP HSIAERLRRE RIAERMRALQ  60
ELVPNTNKTD RAAMLDEILD YVKFLRLQVK VLSMSRLGGA GAVAQLVSDI PLSVKGEASD  120
SGSKQQIWEK WSTDGTEKQV AKLMEEDIGA AMQFLQSKAL CMMPISLAMA IYDTQQSQDG  180
QPVKPEPNTP S
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14550RLRRER
Functional Description ? help Back to Top
Source Description
UniProtRequired for ovule fertilization. {ECO:0000269|PubMed:15634699}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap462920884
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0683880.0AK068388.1 Oryza sativa Japonica Group cDNA clone:J013145C08, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004981425.11e-132transcription factor UNE12
SwissprotO227687e-78UNE12_ARATH; Transcription factor UNE12
TrEMBLK4ADH21e-130K4ADH2_SETIT; Uncharacterized protein
STRINGSi036929m1e-131(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP26563580
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G02590.33e-67bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]