PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462920619
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family bHLH
Protein Properties Length: 292aa    MW: 32101.9 Da    PI: 4.9412
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462920619genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH34.43.8e-11149191754
                HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
        HLH   7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                ++ErrRR+r+N+++  Lr+++Pk +      K++  +iL  +++Y+k+L
  462920619 149 MAERRRRKRLNDRLYMLRSIVPKiS------KMDRTSILGDTIDYVKEL 191
                79*********************66......****************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.301142191IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.22E-16147220IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003539.9E-13148197IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.3E-15149210IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000109.1E-9149191IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000839.65E-5149196No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 292 aa     Download sequence    Send to blast
MELDDDSTFL DELMWSSSAP WQAYPGGGMN YLSPPFQGHP PPLPHPHEEF NSFDCLSEVY  60
CNPYTSSSVA VPENPTAGGQ TLTPLHDAAT MAEEETNCDK GGGIFLSPTF VFGADVGQSS  120
EMAAASIRGG YGDAHHSSKV HGAPSKNLMA ERRRRKRLND RLYMLRSIVP KISKMDRTSI  180
LGDTIDYVKE LTERIKVLEE EIGASPEDMN LLNTLYDSSN NNNQMMVRNS TKFDVQKRGN  240
GSTRIEIFCP ANPGVLLSTV TALEEDGKRQ VISTDEIKQA LLKSAGYGGR YL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1150157ERRRRKRL
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. May be involved in the differentiation of stomatal guard cells. {ECO:0000269|PubMed:17088607}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap462920619
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004985797.11e-120transcription factor bHLH61
SwissprotQ9LSL16e-39BH093_ARATH; Transcription factor bHLH93
TrEMBLA0A0A9PI261e-121A0A0A9PI26_ARUDO; Uncharacterized protein
STRINGSi036470m1e-120(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP13023799
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65640.12e-41beta HLH protein 93
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Sharma N, et al.
    NO FLOWERING IN SHORT DAY (NFL) is a bHLH transcription factor that promotes flowering specifically under short-day conditions in Arabidopsis.
    Development, 2016. 143(4): p. 682-90
    [PMID:26758694]
  4. Chen YS, et al.
    Two MYB-related transcription factors play opposite roles in sugar signaling in Arabidopsis.
    Plant Mol. Biol., 2017. 93(3): p. 299-311
    [PMID:27866313]
  5. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]