PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462919386
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family AP2
Protein Properties Length: 277aa    MW: 30925.5 Da    PI: 10.098
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462919386genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP238.13.7e-121672155
        AP2  1 sgykGVrwdkkrgrWvAeIrd.pseng..kr.krfslgkfgtaeeAakaaiaarkkleg 55
               s+++GV++++++gr++A+++d  + ++  ++ k  + g ++ +e+Aa+a++ a++k++g
  462919386 16 SQFRGVTRHRWTGRYEAHLWDnTC-RKegQTrKGRQ-GGYDKEEKAARAYDLAALKYWG 72
               789******************333.44555535555.779999**************98 PP

2AP247.73.9e-15117166355
        AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                y+GV+++++ grW A+I  +     +k  +lg+f t eeAa+a++ a+ k++g
  462919386 117 YRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 166
                9***************988532...5************************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541718.5E-151682IPR016177DNA-binding domain
CDDcd000185.21E-161682No hitNo description
PfamPF008474.1E-91772IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.2E-121781IPR001471AP2/ERF domain
SMARTSM003809.1E-231786IPR001471AP2/ERF domain
PROSITE profilePS5103216.9631780IPR001471AP2/ERF domain
PRINTSPR003673.0E-61829IPR001471AP2/ERF domain
CDDcd000185.70E-22115176No hitNo description
SuperFamilySSF541713.2E-18115176IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.2E-18116174IPR001471AP2/ERF domain
PROSITE profilePS5103219.203116174IPR001471AP2/ERF domain
SMARTSM003802.9E-33116180IPR001471AP2/ERF domain
PfamPF008475.4E-10117166IPR001471AP2/ERF domain
PRINTSPR003673.0E-6156176IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 277 aa     Download sequence    Send to blast
MPVARRPAQT FGQRTSQFRG VTRHRWTGRY EAHLWDNTCR KEGQTRKGRQ GGYDKEEKAA  60
RAYDLAALKY WGPSTHINFP LSTYEKELEE MKHMSRQEFI AHLRRNSSGF SRGASMYRGV  120
TRHHQHGRWQ ARIGRVAGNK DLYLGTFSTQ EEAAEAYDIA AIKFRGLNAV TNFDISKYDV  180
KRICASTHLI GGDAAWRRSP TRPLPDAPEL AGGASDNSDA SEGHRGAHLL HGLQYAPAMK  240
FEAGEGSGGG NWMTAAERPV AGVASVHQLP VFALWND
Functional Description ? help Back to Top
Source Description
UniProtActs as positive regulator of adventitious (crown) root formation by promoting its initiation. Promotes adventitious root initiation through repression of cytokinin signaling by positively regulating the two-component response regulator RR1. Regulated by the auxin response factor and transcriptional activator ARF23/ARF1. {ECO:0000269|PubMed:21481033}.
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap462919386
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by auxin. {ECO:0000269|PubMed:21481033}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0557670.0BT055767.2 Zea mays full-length cDNA clone ZM_BFb0180B22 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004985511.11e-177AP2-like ethylene-responsive transcription factor AIL5
SwissprotQ1PFE11e-119AIL1_ARATH; AP2-like ethylene-responsive transcription factor AIL1
SwissprotQ84Z021e-118CRL5_ORYSJ; AP2-like ethylene-responsive transcription factor CRL5
TrEMBLK4A8671e-177K4A867_SETIT; Uncharacterized protein
STRINGSi035073m1e-178(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP79738151
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72570.11e-116AP2 family protein
Publications ? help Back to Top
  1. Todd J,Post-Beittenmiller D,Jaworski JG
    KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana.
    Plant J., 1999. 17(2): p. 119-30
    [PMID:10074711]
  2. Kitomi Y, et al.
    The auxin responsive AP2/ERF transcription factor CROWN ROOTLESS5 is involved in crown root initiation in rice through the induction of OsRR1, a type-A response regulator of cytokinin signaling.
    Plant J., 2011. 67(3): p. 472-84
    [PMID:21481033]
  3. Li P,Xue H
    Structural characterization and expression pattern analysis of the rice PLT gene family.
    Acta Biochim. Biophys. Sin. (Shanghai), 2011. 43(9): p. 688-97
    [PMID:21807632]