PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462919245
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family bHLH
Protein Properties Length: 179aa    MW: 19565.1 Da    PI: 6.6624
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462919245genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH24.45.2e-081371655
               HHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
        HLH 16 iNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
               +N+ ++ Lr+l+P++   ++++ + a+i+e A++Y+++L+
  462919245  1 MNDYLAVLRSLMPPS---YAQRGDQASIVEGAINYVRELE 37
               8**************...*******************995 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF000103.0E-5137IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.1E-6147IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.14E-9149IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088811.833136IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.66E-8141No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 179 aa     Download sequence    Send to blast
MNDYLAVLRS LMPPSYAQRG DQASIVEGAI NYVRELEHLL QSLEVQKSFK DRGCNADDGG  60
QSPFAGFFSF SQYSTSSASH GSNGHRIQAE STATADIEAS MVEGHASLKV QVQRRSRQLI  120
RLTAGLQQLG LTTLHLNVST AGATGMYSFS LKVSDCYCIF WTLTDLILYT TLTANLCLI
Cis-element ? help Back to Top
SourceLink
PlantRegMap462919245
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004983211.16e-67transcription factor bHLH96
SwissprotQ9C7T43e-44BH096_ARATH; Transcription factor bHLH96
TrEMBLA0A0A9JFW27e-72A0A0A9JFW2_ARUDO; Uncharacterized protein
STRINGSi038653m3e-67(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP74138156
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72210.19e-32bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]