PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462918310
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family AP2
Protein Properties Length: 320aa    MW: 35047.5 Da    PI: 4.5017
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462918310genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.33.4e-172468250
        AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaar 50
               +ykGVr++k +grWv+eIr p++   r r++lg+++t+e+Aa+a +aa 
  462918310 24 KYKGVRRRK-WGRWVSEIRLPNS---RDRIWLGSYDTPEQAARAFDAAS 68
               8*****998.**********933...5*******************996 PP

2AP254.14e-17277319248
        AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaia 48 
                +ykGVr++k +grWvAeIr p++   r r++lg+++t+e+Aa+a +a
  462918310 277 KYKGVRRRK-WGRWVAEIRLPNS---RDRIWLGSYDTPEKAARAFDA 319
                8*****998.**********933...5*****************886 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.101.2E-212370IPR001471AP2/ERF domain
SuperFamilySSF541711.24E-152471IPR016177DNA-binding domain
SMARTSM003801.3E-172489IPR001471AP2/ERF domain
CDDcd000186.15E-192465No hitNo description
PROSITE profilePS5103219.0192483IPR001471AP2/ERF domain
PfamPF008477.1E-112469IPR001471AP2/ERF domain
PRINTSPR003675.0E-92536IPR001471AP2/ERF domain
PRINTSPR003675.0E-94763IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.107.1E-21276319IPR001471AP2/ERF domain
SuperFamilySSF541714.32E-15277319IPR016177DNA-binding domain
SMARTSM003802.1E-12277319IPR001471AP2/ERF domain
PROSITE profilePS5103219.414277320IPR001471AP2/ERF domain
CDDcd000186.19E-20277319No hitNo description
PfamPF008473.7E-11277319IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 320 aa     Download sequence    Send to blast
LPNAAPSPPA GEQDGRSSEE EERKYKGVRR RKWGRWVSEI RLPNSRDRIW LGSYDTPEQA  60
ARAFDAASEV YAAAASHAHN NNKATAATEA PDSDAVFTSR GRSLAAARTS APLQVSAERM  120
MDWTTEMVAN PPPLFSPTVV GSHAHLTLTA AATDVDMYED ETAACCPGLW SFDCEHGTNV  180
ANTSNPGQFD TSVAESSGTK PTEEEARIIK EAIDLAVEKL LVECANNVIA EDSVVEGEEP  240
ATLVVAEVES PIPPLTMTDN GDQEEQDGRS SEEEERKYKG VRRRKWGRWV AEIRLPNSRD  300
RIWLGSYDTP EKAARAFDAT
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1278284KGVRRRK
Cis-element ? help Back to Top
SourceLink
PlantRegMap462918310
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126144e-36CP012614.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 6 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004966651.13e-49ethylene-responsive transcription factor ERF017
TrEMBLK3Y3026e-48K3Y302_SETIT; Uncharacterized protein
STRINGSi008587m1e-48(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP86132144
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19210.16e-23ERF family protein