PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462917307
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family C3H
Protein Properties Length: 120aa    MW: 12639.3 Da    PI: 8.47
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462917307genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH33.57e-11831427
               ---SGGGGTS--TTTTT-SS-SSS CS
    zf-CCCH  4 elCrffartGtCkyGdrCkFaHgp 27
                +C ++a+ G+Ck+G++CkF H++
  462917307  8 QPCAYYAQHGFCKFGPTCKFDHPM 31
               59********************95 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.211432IPR000571Zinc finger, CCCH-type
SMARTSM003566.9E-5431IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.71E-7534IPR000571Zinc finger, CCCH-type
PfamPF006421.4E-8831IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.8E-6830IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 120 aa     Download sequence    Send to blast
MSLFTGSQPC AYYAQHGFCK FGPTCKFDHP MGSLSYSPSA SSLTDMPVAP YPLSFPVAHM  60
APSAPSSDLR PQYAVTKEPS VNQQALPGTT YGHPGSITKV YAPHTLIRSP ASTAAGMQAS
Cis-element ? help Back to Top
SourceLink
PlantRegMap462917307
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025815660.15e-52uncharacterized protein LOC112892755
SwissprotQ5NAV33e-47C3H5_ORYSJ; Zinc finger CCCH domain-containing protein 5
TrEMBLA0A0A9QL053e-54A0A0A9QL05_ARUDO; Uncharacterized protein
STRINGPavir.Eb00943.1.p4e-53(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2962334
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47850.23e-15C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]