PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462917301
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family C3H
Protein Properties Length: 756aa    MW: 81083.6 Da    PI: 8.6536
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462917301genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH37.15.4e-121943327
               S---SGGGGTS--TTTTT-SS-SSS CS
    zf-CCCH  3 telCrffartGtCkyGdrCkFaHgp 27
               ++ C +f++tGtCk+G++Ck++H++
  462917301 19 QPVCEYFLKTGTCKFGSNCKYHHPK 43
               789********************96 PP

2zf-CCCH37.15.3e-126588427
               ---SGGGGTS--TTTTT-SS-SSS CS
    zf-CCCH  4 elCrffartGtCkyGdrCkFaHgp 27
               ++C+++++tG+Ck+G++CkF+H++
  462917301 65 KECSYYMKTGHCKFGSTCKFHHPE 88
               68********************96 PP

3zf-CCCH34.73e-11216242127
                --S---SGGGGTS--TTTTT-SS-SSS CS
    zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                +++++C+f++rtG+Ck+G++Ck++H++
  462917301 216 PGQPECQFYLRTGHCKFGATCKYHHPR 242
                5789*********************96 PP

4zf-CCCH32.61.3e-10264288327
                S---SGGGGTS--TTTTT-SS-SSS CS
    zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                 ++C ++a++G+C+yG  Ck+ H++
  462917301 264 APPCAYYAQNGYCRYGVACKYDHPM 288
                689********************95 PP

5zf-CCCH331.1e-10400426127
                --S---SGGGGTS--TTTTT-SS-SSS CS
    zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                ++++lC ++ ++G Ck+G++Ck+ H++
  462917301 400 PGQPLCEYYVKNGSCKFGSNCKYDHPR 426
                589**********************96 PP

6zf-CCCH32.51.5e-10447470427
                ---SGGGGTS--TTTTT-SS-SSS CS
    zf-CCCH   4 elCrffartGtCkyGdrCkFaHgp 27 
                ++C+++ +tG+Ck+G++CkF+H++
  462917301 447 KECSYYIKTGHCKFGNTCKFHHPE 470
                68********************96 PP

7zf-CCCH36.96.3e-12595621127
                --S---SGGGGTS--TTTTT-SS-SSS CS
    zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                +++++C ++++tGtCk+G++Ck++H++
  462917301 595 PGQPECEHYMKTGTCKFGPTCKYHHPQ 621
                5789*********************97 PP

8zf-CCCH314.4e-10643667327
                S---SGGGGTS--TTTTT-SS-SSS CS
    zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                  +C ++a+ G+Ck+G++CkF H++
  462917301 643 SQPCAYYAQHGFCKFGPTCKFDHPM 667
                679********************95 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010316.2671644IPR000571Zinc finger, CCCH-type
SMARTSM003563.6E-71643IPR000571Zinc finger, CCCH-type
PfamPF006428.5E-101943IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.44E-61945IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.2E-52145IPR000571Zinc finger, CCCH-type
SMARTSM003561.0E-56188IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.3246189IPR000571Zinc finger, CCCH-type
PfamPF006422.4E-96588IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.14E-56588IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.4E-46787IPR000571Zinc finger, CCCH-type
SMARTSM003565.1E-6215242IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.183215243IPR000571Zinc finger, CCCH-type
PfamPF006429.8E-9217242IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.83E-5219243IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.8E-4221242IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.145261289IPR000571Zinc finger, CCCH-type
SMARTSM003561.1E-6261288IPR000571Zinc finger, CCCH-type
PfamPF006422.6E-8264288IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.14E-5264290IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.6E-4266286IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.53399427IPR000571Zinc finger, CCCH-type
SMARTSM003561.5E-6399426IPR000571Zinc finger, CCCH-type
PfamPF006422.4E-8401426IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.1E-5402427IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.3E-5404426IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.342443471IPR000571Zinc finger, CCCH-type
SMARTSM003565.2E-4443470IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.06E-6446470IPR000571Zinc finger, CCCH-type
PfamPF006423.9E-7447470IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.2E-4449469IPR000571Zinc finger, CCCH-type
SMARTSM003562.5E-6594621IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.056594622IPR000571Zinc finger, CCCH-type
PfamPF006421.8E-9596621IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.84E-5598621IPR000571Zinc finger, CCCH-type
SMARTSM003564.9E-6640667IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.859640668IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.28E-6642670IPR000571Zinc finger, CCCH-type
PfamPF006421.3E-7642667IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.1E-4644665IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 756 aa     Download sequence    Send to blast
FGGGAKNGAA SDFPERLGQP VCEYFLKTGT CKFGSNCKYH HPKQDGSVQS VVLNNNGFPL  60
RPVEKECSYY MKTGHCKFGS TCKFHHPEFV GAPVTPGIYP PLQLASVPSP HAYASLANWQ  120
MGRSPVVPGS YIQGSYTPMM LSSGMVPLQG WSPYPASVNP VASGGTQQTV QAGPLYGIGN  180
RGSSTAIAYG SPYMPYSQST GQSSNNQQEH VFPERPGQPE CQFYLRTGHC KFGATCKYHH  240
PRDLSAPKSN YVFSPLCLPL RPGAPPCAYY AQNGYCRYGV ACKYDHPMGT LGYSSDMPIA  300
PYPLGFPVAA LAPSSSSPDL RPDYISTKDP SVNQVASPVA APEPVGVILP KGGFPPDTIM  360
RAQTSTTNGG SSSPGGVLIG LSNVNGVGRT TSTVEYPERP GQPLCEYYVK NGSCKFGSNC  420
KYDHPREGGF VPVVLNRSGY PLRPGDKECS YYIKTGHCKF GNTCKFHHPE LGVPETSTIY  480
PPVQPSAISS AHPYTQLATL QMGRPPFVPG PFVPGSYPPM MLPSTVMPMQ GWNPYISHMN  540
QVTPSGGQQT VQAPYGLSHQ GPTSSVTYGG HYPQLYHSAG PSSSNKQGYG FPERPGQPEC  600
EHYMKTGTCK FGPTCKYHHP QYFSALNPNY TLNLLGLPLR PGSQPCAYYA QHGFCKFGPT  660
CKFDHPMGSL SYSPSASSLT DMPVAPYPLS FPVAHMAPSA SSSDLRPQYA VTKEPSVNQQ  720
ALPGTTYGHP GSITKVYAPH TLIRSPASTA AGMQAS
Cis-element ? help Back to Top
SourceLink
PlantRegMap462917301
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004967811.10.0zinc finger CCCH domain-containing protein 6
SwissprotQ5NAW20.0C3H6_ORYSJ; Zinc finger CCCH domain-containing protein 6
TrEMBLA0A0D9UZ820.0A0A0D9UZ82_9ORYZ; Uncharacterized protein
STRINGLPERR01G09410.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27613889
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47850.33e-91C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Friedrichs G,Fikri M,Guo Y,Temps F
    Time-resolved cavity ringdown measurements and kinetic modeling of the pressure dependences of the recombination reactions of SiH2 with the alkenes C2H4, C3H6, and t-C4H8.
    J Phys Chem A, 2008. 112(25): p. 5636-46
    [PMID:18512897]
  3. Ning H,Gong C,Li Z,Li X
    Pressure-dependent kinetics of initial reactions in iso-octane pyrolysis.
    J Phys Chem A, 2015. 119(18): p. 4093-107
    [PMID:25868004]