PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462916228
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family MIKC_MADS
Protein Properties Length: 230aa    MW: 26328.2 Da    PI: 8.4863
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462916228genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF77.21.2e-241058250
               ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
     SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
               rien   rqvtf+kRr g+lKKA ELS+LCda++ vi+fs++gk+ye +
  462916228 10 RIENPVHRQVTFCKRRMGLLKKARELSILCDADIGVIVFSPHGKIYELA 58
               8*********************************************965 PP

2K-box61.24.1e-2182175799
      K-box   7 ksleeakaeslqqelakLkkeienLqreqRhllGe.dLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 
                ++ ++++ +  qqe++ L +ei+ Lq+ +R + Ge d+++++l eLq Le++Le  + +iR++K++++ ++ie l++ke +l+ +n  L++++ 
  462916228  82 SEHNKHQFKAIQQEVSALTREIDFLQKGLRYMHGEkDINQMNLDELQALESNLEIWVHNIRTQKMQIMSREIELLRNKEGMLKAANDILQERIT 175
                33566777899***********************868*****************************************************9986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF554554.45E-27174IPR002100Transcription factor, MADS-box
PROSITE profilePS5006629.044161IPR002100Transcription factor, MADS-box
SMARTSM004326.4E-35160IPR002100Transcription factor, MADS-box
CDDcd002659.22E-37273No hitNo description
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004046.3E-26323IPR002100Transcription factor, MADS-box
PfamPF003195.0E-241056IPR002100Transcription factor, MADS-box
PRINTSPR004046.3E-262338IPR002100Transcription factor, MADS-box
PRINTSPR004046.3E-263859IPR002100Transcription factor, MADS-box
PfamPF014861.2E-2285174IPR002487Transcription factor, K-box
PROSITE profilePS5129712.89789180IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0048364Biological Processroot development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 230 aa     Download sequence    Send to blast
MARGKVQMRR IENPVHRQVT FCKRRMGLLK KARELSILCD ADIGVIVFSP HGKIYELATN  60
GNMQALIERY GSTYAGKHGE SSEHNKHQFK AIQQEVSALT REIDFLQKGL RYMHGEKDIN  120
QMNLDELQAL ESNLEIWVHN IRTQKMQIMS REIELLRNKE GMLKAANDIL QERITEQSGI  180
LDVSSNVIIP QVHVPYQLTM ENNRAEWDSG CQKQCDKTTS ACAIPTNHGK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
UniProtProbable transcription factor.
Cis-element ? help Back to Top
SourceLink
PlantRegMap462916228
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025824407.11e-115MADS-box transcription factor 26-like
SwissprotA2YQK93e-76MAD26_ORYSI; MADS-box transcription factor 26
SwissprotQ0J8G83e-76MAD26_ORYSJ; MADS-box transcription factor 26
TrEMBLA0A2T7CVB81e-114A0A2T7CVB8_9POAL; Uncharacterized protein
STRINGSi012632m1e-112(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP149136112
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71692.12e-61AGAMOUS-like 12
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Lee S, et al.
    Further characterization of a rice AGL12 group MADS-box gene, OsMADS26.
    Plant Physiol., 2008. 147(1): p. 156-68
    [PMID:18354041]
  3. Khong GN, et al.
    OsMADS26 Negatively Regulates Resistance to Pathogens and Drought Tolerance in Rice.
    Plant Physiol., 2015. 169(4): p. 2935-49
    [PMID:26424158]