PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462916064
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family AP2
Protein Properties Length: 217aa    MW: 24647.7 Da    PI: 10.4501
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462916064genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP226.81.3e-0846105255
        AP2   2 gykGVrwdkkrgrWvAeIrd.pseng.....krkrfslgkfgtaeeAakaaiaarkkleg 55 
                 y+GV++++++gr +A+++d   +n      k+k+   g ++ +e Aa+a++ a++k++g
  462916064  46 AYRGVTRHRWTGRVEAHLWDkDAWNHdeartKKKKGKQGAYDEEEAAARAHDLAALKYWG 105
                69******************65555567877554445599******************98 PP

2AP225.53.2e-08159191136
        AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkf 36 
                s+y+GV +++ +grW+A+I  +     +k+ +lg++
  462916064 159 SKYRGVARHHHNGRWEARIGRVLG---NKYLYLGTY 191
                89****99**********988422...5*******9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541715.49E-1345114IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.104.3E-1146113IPR001471AP2/ERF domain
SMARTSM003801.6E-1546119IPR001471AP2/ERF domain
PROSITE profilePS5103217.4946113IPR001471AP2/ERF domain
PfamPF008478.2E-746105IPR001471AP2/ERF domain
PRINTSPR003675.3E-54758IPR001471AP2/ERF domain
PRINTSPR003675.3E-595115IPR001471AP2/ERF domain
SuperFamilySSF541713.79E-5159192IPR016177DNA-binding domain
PfamPF008472.4E-4159191IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.4E-4160191IPR001471AP2/ERF domain
SMARTSM003800.014160205IPR001471AP2/ERF domain
PROSITE profilePS510328.715160191IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 217 aa     Download sequence    Send to blast
MAKPRKNATT NNAGAEPKPK RARKCAARES SSSSSQHQQQ QQRTSAYRGV TRHRWTGRVE  60
AHLWDKDAWN HDEARTKKKK GKQGAYDEEE AAARAHDLAA LKYWGPGTVL NFPVPSPSIN  120
SELGLCSYDE ELKEMEGQTR EEYIGSVRRK SSGFSRGVSK YRGVARHHHN GRWEARIGRV  180
LGNKYLYLGT YCKFLTNRHI LPPGYEYILV SRVSMTA
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015696557.18e-83PREDICTED: AP2-like ethylene-responsive transcription factor At1g16060
SwissprotQ6X5Y62e-69WRI1_ARATH; Ethylene-responsive transcription factor WRI1
TrEMBLJ3MXL39e-83J3MXL3_ORYBR; Uncharacterized protein
STRINGOB09G17420.12e-82(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP33193678
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G79700.26e-62AP2 family protein