PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462915496
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family bHLH
Protein Properties Length: 145aa    MW: 16291.5 Da    PI: 9.6546
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462915496genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH42.41.2e-1375120655
                HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
        HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                +++Er RR +i +++ +L+el+P+     +k  + +++L +Av+YIk+Lq
  462915496  75 SIAERVRRTKISERIRKLQELVPNM----DKQTNTSDMLDLAVDYIKDLQ 120
                689*********************7....688*****************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.94569119IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.19E-1672130IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.07E-1173124No hitNo description
Gene3DG3DSA:4.10.280.104.2E-1674137IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.4E-1375125IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.3E-1075120IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048573Biological Processphotoperiodism, flowering
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 145 aa     Download sequence    Send to blast
MGSGWEDSSS LMSENMSGMK RPRDSSEPGQ NGLAHQFSLP KTSSEMAAIE KFLQFQDAVP  60
CKIRAKRGCA THPRSIAERV RRTKISERIR KLQELVPNMD KQTNTSDMLD LAVDYIKDLQ  120
KQVKVLNESR ANCTCSASKH QQYSG
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00308DAPTransfer from AT2G42280Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap462915496
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3546341e-148AK354634.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1009F18.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004957993.17e-95transcription factor bHLH130
RefseqXP_022680313.17e-95transcription factor bHLH130
SwissprotQ66GR33e-59BH130_ARATH; Transcription factor bHLH130
TrEMBLM8BHD62e-94M8BHD6_AEGTA; Transcription factor bHLH130
STRINGPavir.Bb03157.1.p2e-98(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP188438103
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42280.11e-61bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]