PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462915077
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family bHLH
Protein Properties Length: 234aa    MW: 25309.5 Da    PI: 8.3528
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462915077genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH28.52.7e-0965112455
                HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
        HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                +h+ +Er RR++iN ++e L+el+P +s    k    a +L + +++++sLq
  462915077  65 SHSLAERARREKINARMELLKELVPGCS----KVSGTALVLDEIINHVQSLQ 112
                8*************************94....22445556666666666665 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000832.04E-1059116No hitNo description
SuperFamilySSF474591.44E-1559130IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.62761111IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.6E-1561129IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.8E-765112IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.6E-867117IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 234 aa     Download sequence    Send to blast
MTPPSSSTFG ILLPLCARNN GKAAKKGKTA AGADESKPAG GGGDGEDEKP AYVHVRARRG  60
QATDSHSLAE RARREKINAR MELLKELVPG CSKVSGTALV LDEIINHVQS LQRQVEYLSM  120
RLAAVNPRVD FGGLDSFLTT ECGRLAGLNC KNGIDLEQVT WPEMGVHGAR HLMQLQQQFW  180
HGDLAHPHQV ASQWEKRGDG HPTVFSNSSS SLFGYDLTSS GAQQPPTSKL KTEL
Cis-element ? help Back to Top
SourceLink
PlantRegMap462915077
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0407290.0BT040729.1 Zea mays full-length cDNA clone ZM_BFc0120O20 mRNA, complete cds.
GenBankBT0627470.0BT062747.1 Zea mays full-length cDNA clone ZM_BFb0340N22 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001347160.11e-135uncharacterized protein LOC100273300
SwissprotQ8VZ023e-50BH048_ARATH; Transcription factor bHLH48
TrEMBLI1GXA91e-130I1GXA9_BRADI; Uncharacterized protein
STRINGGRMZM2G378653_P021e-139(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP69322735
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57800.22e-53bHLH family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Li Y,Wang H,Li X,Liang G,Yu D
    Two DELLA-interacting proteins bHLH48 and bHLH60 regulate flowering under long-day conditions in Arabidopsis thaliana.
    J. Exp. Bot., 2017. 68(11): p. 2757-2767
    [PMID:28591805]