PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462913788
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family bHLH
Protein Properties Length: 290aa    MW: 31106.3 Da    PI: 9.273
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462913788genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH38.22.6e-12140185555
                HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
        HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                h+++Er RR++i +++ +L++l+P++      K +Ka++L + ++Y+k Lq
  462913788 140 HSIAERLRREKISDRMKNLQDLVPNS-----NKADKASMLDEIIDYVKFLQ 185
                99***********************7.....5******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000833.63E-13133189No hitNo description
SuperFamilySSF474592.22E-17133195IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.212135184IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.6E-17137194IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.0E-9140185IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.0E-14141190IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 290 aa     Download sequence    Send to blast
MPLGAAKRGS RLNTATAHQR DSRRDIGSDS KEFISGRLPS FATIPETNLP ASTFKTQKQE  60
QNVMCDFPVP AFAARNQMAV TATQGTLIPP KMPSCTNENK SEGPVSHPSG VQVQANSANG  120
NGSGVKPRVR ARRGQATDPH SIAERLRREK ISDRMKNLQD LVPNSNKADK ASMLDEIIDY  180
VKFLQLQVKV LSMSRLGATG AVLPLLSESQ TEGCGGQPLS ATTTAHGLPD VQDSEDTLAF  240
EQEVVKLMES SITSAMQYLQ NKGLCLMPVA LASVVSNQKG MDTAAIASQK
Cis-element ? help Back to Top
SourceLink
PlantRegMap462913788
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by heat treatment. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025812392.11e-148transcription factor bHLH110-like
SwissprotQ9LSQ32e-57BH082_ARATH; Transcription factor bHLH82
TrEMBLA0A1E5UK131e-146A0A1E5UK13_9POAL; Transcription factor bHLH69
TrEMBLA0A2S3HL111e-146A0A2S3HL11_9POAL; Uncharacterized protein
STRINGSb10g006250.11e-146(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP32543879
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58010.17e-60LJRHL1-like 3
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Tam TH,Catarino B,Dolan L
    Conserved regulatory mechanism controls the development of cells with rooting functions in land plants.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(29): p. E3959-68
    [PMID:26150509]
  3. Zhang J, et al.
    Sperm cells are passive cargo of the pollen tube in plant fertilization.
    Nat Plants, 2017. 3: p. 17079
    [PMID:28585562]