PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462912293
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family AP2
Protein Properties Length: 223aa    MW: 25166.6 Da    PI: 9.6056
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462912293genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP251.91.9e-1670129155
        AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng...kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                s+++GV++++++gr++A+++d  s+n    k+ k+++lg ++ +e Aa+a++ a++k++g
  462912293  70 SRFRGVSRHRWTGRFEAHLWDkNSWNPtqrKKgKQVYLGAYDEEEAAARAYDLAALKYWG 129
                789******************888855666447*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541713.86E-1770138IPR016177DNA-binding domain
PfamPF008476.2E-1370129IPR001471AP2/ERF domain
SMARTSM003801.1E-2471143IPR001471AP2/ERF domain
PROSITE profilePS5103219.80971137IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.4E-1671138IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 223 aa     Download sequence    Send to blast
MENMVMVKNE IENFSGSAPA VMINASEGGE ASQVVRGRRR EPALLAPISG GANSSGIGKP  60
LPSITVKRSS RFRGVSRHRW TGRFEAHLWD KNSWNPTQRK KGKQVYLGAY DEEEAAARAY  120
DLAALKYWGP TTYTNFPVMD YEKELKIMEN LTKEEYLASL RSYLKPDKYI LMTERAAVFQ  180
EACPSTEVLP DNGQMFQAPS KWKMGSENWE GFRKQVSLSG NLQ
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
195103PTQRKKGKQ
Cis-element ? help Back to Top
SourceLink
PlantRegMap462912293
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY6851125e-81AY685112.1 Oryza sativa (japonica cultivar-group) transcription factor AP2D4 (AP2D4) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004961382.13e-86ethylene-responsive transcription factor WRI1
TrEMBLA0A1E5WDW39e-90A0A1E5WDW3_9POAL; Ethylene-responsive transcription factor WRI1
STRINGSi022186m1e-85(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP5117122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41710.27e-37AP2 family protein